RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CREBRFQ8IUR6 639 aa23.59■■□□□ 1.37
CLN3-209ENST00000561689 CCDC60Q8IWA6 550 aaPredicted RBP23.59■■□□□ 1.37
CLN3-209ENST00000561689 ABRAQ8N0Z2 381 aa23.59■■□□□ 1.37
CLN3-209ENST00000561689 SRRTQ9BXP5 876 aaKnown RBP23.59■■□□□ 1.37
CLN3-209ENST00000561689 COL4A3BPQ9Y5P4 624 aa23.59■■□□□ 1.37
CLN3-209ENST00000561689 ARIH2O95376 493 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 TGFB3P10600 412 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 GRM1Q13255 1194 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 PLA2G4FQ68DD2 849 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 MIS18BP1Q6P0N0 1132 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 CSGALNACT2Q8N6G5 542 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 MORC4Q8TE76 937 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 KCND2Q9NZV8 630 aa23.58■■□□□ 1.37
CLN3-209ENST00000561689 ASB14A6NK59 587 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 BACH1O14867 736 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 CBFA2T2O43439 604 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 ZNF862O60290 1169 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 FARP2O94887 1054 aaPredicted RBP23.58■■□□□ 1.36
CLN3-209ENST00000561689 FAM13AO94988 1023 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 CASP5P51878 434 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 PTPN21Q16825 1174 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 ARMCX2Q7L311 632 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 MAEAQ7L5Y9 396 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 ATP6V0A1Q93050 837 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 CCDC43Q96MW1 224 aaKnown RBP23.58■■□□□ 1.36
CLN3-209ENST00000561689 INTS13Q9NVM9 706 aa23.58■■□□□ 1.36
CLN3-209ENST00000561689 GGPS1O95749 300 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 SUPT20HL2P0C7V6 817 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 MAPK4P31152 587 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 NPEPPSP55786 919 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 NEDD9Q14511 834 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 ANO5Q75V66 913 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 APTXQ7Z2E3 356 aaKnown RBP23.57■■□□□ 1.36
CLN3-209ENST00000561689 PLEKHH3Q7Z736 793 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 IRF2BP1Q8IU81 584 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 NELFCDQ8IXH7 590 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 MYCT1Q8N699 235 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 SCFD1Q8WVM8 642 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 CCDC102AQ96A19 550 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 ZNF830Q96NB3 372 aaPredicted RBP23.57■■□□□ 1.36
CLN3-209ENST00000561689 DDX41Q9UJV9 622 aaKnown RBP23.57■■□□□ 1.36
CLN3-209ENST00000561689 ADGRA2Q96PE1 1338 aa23.57■■□□□ 1.36
CLN3-209ENST00000561689 TMEM88BA6NKF7 163 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 GOLGA6L6A8MZA4 724 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 GUCY2CP25092 1073 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 GRB14Q14449 540 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 CCDC144BQ3MJ40 725 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 HS1BP3Q53T59 392 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 DPP9Q86TI2 863 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 ZIC5Q96T25 663 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 MRPL44Q9H9J2 332 aaKnown RBP23.56■■□□□ 1.36
CLN3-209ENST00000561689 ZCCHC17Q9NP64 241 aaKnown RBP23.56■■□□□ 1.36
CLN3-209ENST00000561689 PDGFCQ9NRA1 345 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 SYNGAP1Q96PV0 1343 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 KCNJ18B7U540 433 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 USO1O60763 962 aaKnown RBP23.56■■□□□ 1.36
CLN3-209ENST00000561689 INHBEP58166 350 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 KCNJ12Q14500 433 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 XKR9Q5GH70 373 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 CCDC186Q7Z3E2 898 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 FILIP1Q7Z7B0 1213 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 MLXIPQ9HAP2 919 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 PARVGQ9HBI0 331 aa23.56■■□□□ 1.36
CLN3-209ENST00000561689 LOC102724159A0A0B4J2E5 919 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 HIP1RO75146 1068 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 ATG7O95352 703 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 GAP43P17677 238 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 PWP2Q15269 919 aaKnown RBP23.55■■□□□ 1.36
CLN3-209ENST00000561689 TCP11X2Q5H9J9 407 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 TMEM63BQ5T3F8 832 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 PAXIP1Q6ZW49 1069 aaPredicted RBP23.55■■□□□ 1.36
CLN3-209ENST00000561689 THAP9Q9H5L6 903 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 ANKEF1Q9NU02 776 aa23.55■■□□□ 1.36
CLN3-209ENST00000561689 ESPNB1AK53 854 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 STBD1O95210 358 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 MYBP10242 640 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 PTGS1P23219 599 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 KRT31Q15323 416 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 KCNV1Q6PIU1 500 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 METTL7BQ6UX53 244 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 TMC6Q7Z403 805 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 ODF2LQ9ULJ1 636 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 DOCK5Q9H7D0 1870 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 GSTTP1A0A1W2PQM5 241 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 ZNF131P52739 623 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 PRKCEQ02156 737 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 DAW1Q8N136 415 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 ZNF302Q9NR11 478 aa23.54■■□□□ 1.36
CLN3-209ENST00000561689 LRRC37A2A6NM11 1700 aa23.53■■□□□ 1.36
CLN3-209ENST00000561689 TLR2O60603 784 aa23.53■■□□□ 1.36
CLN3-209ENST00000561689 DKC1O60832 514 aaKnown RBP eCLIP23.53■■□□□ 1.36
CLN3-209ENST00000561689 MAPK7Q13164 816 aa23.53■■□□□ 1.36
CLN3-209ENST00000561689 CCDC62Q6P9F0 684 aa23.53■■□□□ 1.36
CLN3-209ENST00000561689 OTUD6AQ7L8S5 288 aa23.53■■□□□ 1.36
CLN3-209ENST00000561689 NOC3LQ8WTT2 800 aaKnown RBP23.53■■□□□ 1.36
CLN3-209ENST00000561689 OLFML3Q9NRN5 406 aa23.53■■□□□ 1.36
CLN3-209ENST00000561689 LIMA1Q9UHB6 759 aaKnown RBP23.53■■□□□ 1.36
CLN3-209ENST00000561689 IGSF9BQ9UPX0 1349 aa23.53■■□□□ 1.36
CLN3-209ENST00000561689 A0A1B0GTH6 734 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 PRPF6O94906 941 aaKnown RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms