RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 MARCH8Q5T0T0 291 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 PDE12Q6L8Q7 609 aaKnown RBP20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 USP17L6PQ6QN14 398 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 THNSL1Q8IYQ7 743 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 SUSD6Q92537 303 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 AZI2Q9H6S1 392 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 TRPC6Q9Y210 931 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 GSTTP1A0A1W2PQM5 241 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 ATP9AO75110 1047 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 INSRRP14616 1297 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 KCNA2P16389 499 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 GATMP50440 423 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 NFX1Q12986 1120 aaKnown RBP20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 WTAPQ15007 396 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 DUSP6Q16828 381 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 CRIPAKQ8N1N5 446 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 ATP8B4Q8TF62 1192 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 RRP36Q96EU6 259 aaKnown RBP20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 RIPOR3Q96MK2 946 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 CELF4Q9BZC1 486 aaKnown RBP20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 PKD2L1Q9P0L9 805 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 SEC63Q9UGP8 760 aaKnown RBP20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 IGSF9BQ9UPX0 1349 aa20.46■□□□□ 0.87
TSPAN3-208ENST00000560514 FGF18O76093 207 aa20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 TECP42680 631 aa20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 SARSP49591 514 aaKnown RBP20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 RBM10P98175 930 aaKnown RBP20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 MTMR1Q13613 665 aa20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 CATIPQ7Z7H3 387 aa20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 TMEM260Q9NX78 707 aa20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 NR2E1Q9Y466 385 aa20.45■□□□□ 0.86
TSPAN3-208ENST00000560514 TBKBP1A7MCY6 615 aa20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 PIK3CDO00329 1044 aa20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 GALR2O43603 387 aaPredicted RBP20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 SP100P23497 879 aaPredicted RBP20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 KRT76Q01546 638 aa20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 B4GALNT3Q6L9W6 998 aa20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 RALYLQ86SE5 291 aaKnown RBP20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 ZBTB10Q96DT7 871 aa20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 TSHZ2Q9NRE2 1034 aa20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 PUF60Q9UHX1 559 aaKnown RBP20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 PCDHA2Q9Y5H9 948 aa20.44■□□□□ 0.86
TSPAN3-208ENST00000560514 DENND3A2RUS2 1198 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 TROAPQ12815 778 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 TMEM266Q2M3C6 531 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 ODR4Q5SWX8 454 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 ANKRD54Q6NXT1 300 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 FAM43BQ6ZT52 329 aaPredicted RBP20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 NME8Q8N427 588 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 APOL5Q9BWW9 433 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 GINS2Q9Y248 185 aa20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 FNDC1Q4ZHG4 1894 aaPredicted RBP20.43■□□□□ 0.86
TSPAN3-208ENST00000560514 PLXNA3P51805 1871 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 PROB1E7EW31 1015 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 MEIS2O14770 477 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 MAFGO15525 162 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 MTMR3Q13615 1198 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 PLPP4Q5VZY2 271 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 KREMEN2Q8NCW0 462 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 VN1R2Q8NFZ6 395 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 CTCFLQ8NI51 663 aaPredicted RBP20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 JPH1Q9HDC5 661 aaPredicted RBP20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 ENTPD7Q9NQZ7 604 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 C1orf112Q9NSG2 853 aa20.42■□□□□ 0.86
TSPAN3-208ENST00000560514 SPDYE3A6NKU9 549 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 PDGFBP01127 241 aaPredicted RBP20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 HOXB8P17481 243 aaPredicted RBP20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 ITGB5P18084 799 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 LAG3P18627 525 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 ERVFC1P60507 584 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 LLGL2Q6P1M3 1020 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 TMEM184AQ6ZMB5 413 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 PLEKHM2Q8IWE5 1019 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 UBALD2Q8IYN6 164 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 COLGALT1Q8NBJ5 622 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 TMX1Q9H3N1 280 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 OSBPL3Q9H4L5 887 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 PSTPIP2Q9H939 334 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 TYW1Q9NV66 732 aaKnown RBP20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 SLC9A2Q9UBY0 812 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 U3KPZ7 1027 aaPredicted RBP20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 KDM3AQ9Y4C1 1321 aa20.41■□□□□ 0.86
TSPAN3-208ENST00000560514 SMIM35A0A1B0GVV1 85 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 RPS6KA5O75582 802 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 KIF5BP33176 963 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 CES5AQ6NT32 575 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 ASCL5Q7RTU5 278 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 CHD1LQ86WJ1 897 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 NCOA7Q8NI08 942 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 TRAPPC12Q8WVT3 735 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 ADAM2Q99965 735 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 TCF25Q9BQ70 676 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 SDF4Q9BRK5 362 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 SPZ1Q9BXG8 430 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 S1PR5Q9H228 398 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 SENP2Q9HC62 589 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 SORCS3Q9UPU3 1222 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 LZTS1Q9Y250 596 aa20.4■□□□□ 0.86
TSPAN3-208ENST00000560514 MYO10Q9HD67 2058 aa20.39■□□□□ 0.86
TSPAN3-208ENST00000560514 FSCN2O14926 492 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms