RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CCDC85CA6NKD9 419 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 ADCY3O60266 1144 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 CDC14BO60729 498 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 FOXE3Q13461 319 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 RASGRF1Q13972 1273 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 FAM47CQ5HY64 1035 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 FAM209AQ5JX71 171 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 AGBL4Q5VU57 503 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 CXXC5Q7LFL8 322 aaKnown RBP7.2□□□□□ -1.26
VPS13C-208ENST00000559119 PCED1AQ9H1Q7 454 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 C12orf65Q9H3J6 166 aaKnown RBP7.2□□□□□ -1.26
VPS13C-208ENST00000559119 GALNT8Q9NY28 637 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 CBLCQ9ULV8 474 aa7.2□□□□□ -1.26
VPS13C-208ENST00000559119 ARVCFO00192 962 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 RAD17O75943 681 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 HMGCRP04035 888 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 AMY2AP04746 511 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 AMY2BP19961 511 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 RBM25P49756 843 aaKnown RBP7.19□□□□□ -1.26
VPS13C-208ENST00000559119 KCNQ1P51787 676 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 JAM2P57087 298 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 IL13RA1P78552 427 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 NOLC1Q14978 699 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS13C-208ENST00000559119 USP39Q53GS9 565 aaKnown RBP7.19□□□□□ -1.26
VPS13C-208ENST00000559119 RNF207Q6ZRF8 634 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 POLNQ7Z5Q5 900 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 ZC3H7AQ8IWR0 971 aaKnown RBP7.19□□□□□ -1.26
VPS13C-208ENST00000559119 ZBTB38Q8NAP3 1195 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-208ENST00000559119 OR14A2Q96R54 314 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 DPYSL5Q9BPU6 564 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 ZDHHC5Q9C0B5 715 aa7.19□□□□□ -1.26
VPS13C-208ENST00000559119 CCDC66A2RUB6 948 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 APPP05067 770 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 ACO1P21399 889 aaKnown RBP7.18□□□□□ -1.26
VPS13C-208ENST00000559119 AOAHP28039 575 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 ADCY8P40145 1251 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 DNM2P50570 870 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 GABREP78334 506 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 KLF10Q13118 480 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 CCDC113Q9H0I3 377 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 CSRNP2Q9H175 543 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 PUF60Q9UHX1 559 aaKnown RBP7.18□□□□□ -1.26
VPS13C-208ENST00000559119 PCDHA9Q9Y5H5 950 aa7.18□□□□□ -1.26
VPS13C-208ENST00000559119 NPIPB8E9PQR5 432 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 ARHGAP6O43182 974 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 CLASP2O75122 1294 aaKnown RBP7.17□□□□□ -1.26
VPS13C-208ENST00000559119 C6orf222P0C671 652 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-208ENST00000559119 HERVK_113P62684 666 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 FOXB2Q5VYV0 432 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 OTOP2Q7RTS6 562 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 FAM89AQ96GI7 184 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 WNK4Q96J92 1243 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 MENTQ9BUN1 341 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 SLITRK6Q9H5Y7 841 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 SLC30A1Q9Y6M5 507 aa7.17□□□□□ -1.26
VPS13C-208ENST00000559119 ZNF561-AS1K7EIQ3 104 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 KCNK3O14649 394 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 C4BPAP04003 597 aaKnown RBP7.16□□□□□ -1.26
VPS13C-208ENST00000559119 MC4RP32245 332 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 RPS19P39019 145 aaKnown RBP7.16□□□□□ -1.26
VPS13C-208ENST00000559119 NFYCQ13952 458 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 MIIPQ5JXC2 388 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 DHRS4Q9BTZ2 278 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 BTBD2Q9BX70 525 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 KRTAP17-1Q9BYP8 105 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 KIAA1683Q9H0B3 1180 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 BTBD7Q9P203 1132 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 CDC42EP3Q9UKI2 254 aa7.16□□□□□ -1.26
VPS13C-208ENST00000559119 DIAPH1O60610 1272 aaKnown RBP7.15□□□□□ -1.26
VPS13C-208ENST00000559119 CRTAMO95727 393 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 ECE1P42892 770 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 MEOX1P50221 254 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 STILQ15468 1287 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 USP30Q70CQ3 517 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 LARP4Q71RC2 724 aaKnown RBP eCLIP7.15□□□□□ -1.26
VPS13C-208ENST00000559119 EXTL1Q92935 676 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 ZNF503Q96F45 646 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 PLA2G12BQ9BX93 195 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 SMURF1Q9HCE7 757 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 UCKL1Q9NWZ5 548 aa7.15□□□□□ -1.26
VPS13C-208ENST00000559119 ING1Q9UK53 422 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-208ENST00000559119 FAM153BP0C7A2 387 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 ZC3H6P61129 1189 aaKnown RBP7.14□□□□□ -1.27
VPS13C-208ENST00000559119 LACTBP83111 547 aaPredicted RBP7.14□□□□□ -1.27
VPS13C-208ENST00000559119 EIF4HQ15056 248 aaKnown RBP7.14□□□□□ -1.27
VPS13C-208ENST00000559119 TBR1Q16650 682 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 NBPF6Q5VWK0 638 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 Q6ZSN1 163 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 RTKN2Q8IZC4 609 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 EXOC2Q96KP1 924 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 NBPF4Q96M43 638 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 MSL2Q9HCI7 577 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 SIRPGQ9P1W8 387 aa7.14□□□□□ -1.27
VPS13C-208ENST00000559119 KDM2BQ8NHM5 1336 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 A0A0G2JNJ9 132 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 OVOL3O00110 214 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 MATN2O00339 956 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 SCDO00767 359 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 ATP2B1P20020 1258 aa7.13□□□□□ -1.27
VPS13C-208ENST00000559119 CD83Q01151 205 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms