RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TNNI2P48788 182 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 SMTNP53814 917 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 ERVK-9P63128 1117 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 ACTN3Q08043 901 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-232ENST00000557487 KCNH2Q12809 1159 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 FBXW10Q5XX13 1052 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 C6orf89Q6UWU4 347 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 RASGEF1CQ8N431 466 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 GLIS3Q8NEA6 775 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 HAS1Q92839 578 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 RABEP2Q9H5N1 569 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 ANKIB1Q9P2G1 1089 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 SUCLA2Q9P2R7 463 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-232ENST00000557487 JAG2Q9Y219 1238 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 TRAF3IP3Q9Y228 551 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 DIS3Q9Y2L1 958 aaKnown RBP17.81■□□□□ 0.44
SHMT2-232ENST00000557487 NFS1Q9Y697 457 aa17.81■□□□□ 0.44
SHMT2-232ENST00000557487 GOLGA6L7A0A1B0GV03 622 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 GMNCA6NCL1 334 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 PLA2G4BP0C869 781 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 ECHS1P30084 290 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 CLUL1Q15846 466 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 MSL1Q68DK7 614 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 IRF2BP2Q7Z5L9 587 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 SLFN11Q7Z7L1 901 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 KLHL7Q8IXQ5 586 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 SCFD1Q8WVM8 642 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 SEC14L1Q92503 715 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 SPAG5Q96R06 1193 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 UBA5Q9GZZ9 404 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 METTL14Q9HCE5 456 aaKnown RBP17.8■□□□□ 0.44
SHMT2-232ENST00000557487 FAM114A2Q9NRY5 505 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 MTMR4Q9NYA4 1195 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 PPP1R1BQ9UD71 204 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-232ENST00000557487 AFPP02771 609 aaKnown RBP17.8■□□□□ 0.44
SHMT2-232ENST00000557487 GSCP56915 257 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-232ENST00000557487 GRAPQ13588 217 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 ECM1Q16610 540 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 HERC4Q5GLZ8 1057 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-232ENST00000557487 FMNL3Q8IVF7 1028 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 GRAPLQ8TC17 118 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-232ENST00000557487 COA7Q96BR5 231 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 NAGPAQ9UK23 515 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 TTC7AQ9ULT0 858 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-232ENST00000557487 NENFQ9UMX5 172 aa17.8■□□□□ 0.44
SHMT2-232ENST00000557487 MYO3BQ8WXR4 1341 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 E7EVH7 732 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 CEP104O60308 925 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 ZPR1O75312 459 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 CTNNA1P35221 906 aaKnown RBP17.79■□□□□ 0.44
SHMT2-232ENST00000557487 EIF3BP55884 814 aaKnown RBP17.79■□□□□ 0.44
SHMT2-232ENST00000557487 PTK2Q05397 1052 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 MOXD1Q6UVY6 613 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 GPBP1Q86WP2 473 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 SLFN12Q8IYM2 578 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 TPCN2Q8NHX9 752 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 CDK5RAP2Q96SN8 1893 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 PACSIN1Q9BY11 444 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 CNOT10Q9H9A5 744 aaKnown RBP17.79■□□□□ 0.44
SHMT2-232ENST00000557487 ARMCX3Q9UH62 379 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-232ENST00000557487 SRP68Q9UHB9 627 aaKnown RBP17.79■□□□□ 0.44
SHMT2-232ENST00000557487 SLC12A6Q9UHW9 1150 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 HDAC9Q9UKV0 1011 aa17.79■□□□□ 0.44
SHMT2-232ENST00000557487 GTPBP10A4D1E9 387 aaKnown RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 C5orf60A6NFR6 353 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 SLC16A3O15427 465 aaKnown RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 SART1O43290 800 aaKnown RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 TRAPPC3O43617 180 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 CALUO43852 315 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 UCHL3P15374 230 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 CYP11B2P19099 503 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 ZNF844Q08AG5 666 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 GPATCH4Q5T3I0 446 aaKnown RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 ALKBH5Q6P6C2 394 aaKnown RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 CCDC50Q8IVM0 306 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 CYFIP2Q96F07 1278 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 PACSIN2Q9UNF0 486 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 GAKO14976 1311 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 IGKV6D-41A0A0C4DH26 115 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 SSBP05455 408 aaKnown RBP eCLIP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 H2AFZP0C0S5 128 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 ZBTB48P10074 688 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 NR2F2P24468 414 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 DNA2P51530 1060 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 PPP2R2AP63151 447 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 ARID5AQ03989 594 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 PDE4CQ08493 712 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 ZNF543Q08ER8 600 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 EXOC3L4Q17RC7 722 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 DPY19L2P1Q6NXN4 242 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 CCDC121Q6ZUS5 278 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 H2AFVQ71UI9 128 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 ZNF571Q7Z3V5 609 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 PLCD3Q8N3E9 789 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 KCTD17Q8N5Z5 321 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 TBC1D22AQ8WUA7 517 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 KIAA1024Q9UPX6 916 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 STXBP5LQ9Y2K9 1186 aa17.78■□□□□ 0.44
SHMT2-232ENST00000557487 NOC2LQ9Y3T9 749 aaKnown RBP17.78■□□□□ 0.44
SHMT2-232ENST00000557487 DAAM1Q9Y4D1 1078 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms