RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ZNF543Q08ER8 600 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 EXOC3L4Q17RC7 722 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 DPY19L2P1Q6NXN4 242 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 CCDC121Q6ZUS5 278 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 H2AFVQ71UI9 128 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 ZNF571Q7Z3V5 609 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 PLCD3Q8N3E9 789 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 KCTD17Q8N5Z5 321 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 TBC1D22AQ8WUA7 517 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 KIAA1024Q9UPX6 916 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 STXBP5LQ9Y2K9 1186 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 NOC2LQ9Y3T9 749 aaKnown RBP17.78■□□□□ 0.44
SHMT2-231ENST00000557433 DAAM1Q9Y4D1 1078 aa17.78■□□□□ 0.44
SHMT2-231ENST00000557433 PDXKO00764 312 aa17.77■□□□□ 0.44
SHMT2-231ENST00000557433 CHUKO15111 745 aa17.77■□□□□ 0.44
SHMT2-231ENST00000557433 RPL13P26373 211 aaKnown RBP17.77■□□□□ 0.44
SHMT2-231ENST00000557433 RHBDL3P58872 404 aa17.77■□□□□ 0.44
SHMT2-231ENST00000557433 HDLBPQ00341 1268 aaKnown RBP17.77■□□□□ 0.44
SHMT2-231ENST00000557433 RNF187Q5TA31 235 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-231ENST00000557433 PEX26Q7Z412 305 aa17.77■□□□□ 0.44
SHMT2-231ENST00000557433 NELFCDQ8IXH7 590 aa17.77■□□□□ 0.44
SHMT2-231ENST00000557433 FRMPD2Q68DX3 1309 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-231ENST00000557433 CYP3A7-CYP3A51PA0A087WV96 503 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 KRIT1O00522 736 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 KRT18P05783 430 aaKnown RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 XRCC5P13010 732 aaKnown RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 IL1R1P14778 569 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 FERP16591 822 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 CYP3A7P24462 503 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 UAP1Q16222 522 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 KNOP1Q1ED39 458 aaKnown RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 GPIHBP1Q8IV16 184 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 METTL13Q8N6R0 699 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 CENPTQ96BT3 561 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 MBOAT7Q96N66 472 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 NAP1L3Q99457 506 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 RAB17Q9H0T7 212 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 JMJD4Q9H9V9 463 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 KCNMB3Q9NPA1 279 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 ATF5Q9Y2D1 282 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 UTP11Q9Y3A2 253 aaKnown RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 AHDC1Q5TGY3 1603 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 TTLL1O95922 423 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 ERCC3P19447 782 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 SEC24CP53992 1094 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 SLC12A3P55017 1021 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 GRIK5Q16478 980 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 BMT2Q1RMZ1 405 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 CROCCP2Q86T23 111 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 ERMNQ8TAM6 284 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 DHX36Q9H2U1 1008 aaKnown RBP17.76■□□□□ 0.43
SHMT2-231ENST00000557433 PSTPIP2Q9H939 334 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 SPATA31A5Q5VU36 1347 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 SPATA31A7Q8IWB4 1347 aa17.76■□□□□ 0.43
SHMT2-231ENST00000557433 E9PMD0 336 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 TULP1O00294 542 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-231ENST00000557433 ZBTB5O15062 677 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 TBX3O15119 743 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 RASSF9O75901 435 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 ATP2B4P23634 1241 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 PON1P27169 355 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 HPDP32754 393 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-231ENST00000557433 GABPAQ06546 454 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 IFT88Q13099 833 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 TRADDQ15628 312 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 ADGRF4Q8IZF3 695 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 HES6Q96HZ4 224 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 CD209Q9NNX6 404 aa17.75■□□□□ 0.43
SHMT2-231ENST00000557433 MYO1FO00160 1098 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 JAM2P57087 298 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 RNASE9P60153 205 aaKnown RBP17.74■□□□□ 0.43
SHMT2-231ENST00000557433 EPHA7Q15375 998 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 EPM2AIP1Q7L775 607 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-231ENST00000557433 TMC3Q7Z5M5 1100 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 HOOK3Q86VS8 718 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 CCDC13Q8IYE1 715 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 FGFBP2Q9BYJ0 223 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 TBC1D7Q9P0N9 293 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 TMCO5BA8MYB1 307 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 RDXP35241 583 aaKnown RBP17.74■□□□□ 0.43
SHMT2-231ENST00000557433 UBE2SQ16763 222 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 LACTB2Q53H82 288 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-231ENST00000557433 ODF2Q5BJF6 829 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 NT5DC3Q86UY8 548 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 CACNA2D3Q8IZS8 1091 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 MAGEC3Q8TD91 643 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 UBLCP1Q8WVY7 318 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-231ENST00000557433 PPANQ9NQ55 473 aaKnown RBP17.74■□□□□ 0.43
SHMT2-231ENST00000557433 KLC4Q9NSK0 619 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 TYW1Q9NV66 732 aaKnown RBP17.74■□□□□ 0.43
SHMT2-231ENST00000557433 AMFRQ9UKV5 643 aa17.74■□□□□ 0.43
SHMT2-231ENST00000557433 NCANO14594 1321 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 PPFIA2O75334 1257 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 GHRP10912 638 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 SLC9A1P19634 815 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 LMNB1P20700 586 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 GBP1P32455 592 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 IFFO1Q0D2I5 559 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 AP3B2Q13367 1082 aa17.73■□□□□ 0.43
SHMT2-231ENST00000557433 CENPHQ9H3R5 247 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms