RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 ATP2C2O75185 946 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 MYBP10242 640 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 SKOR1P84550 965 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 PPP1R18Q6NYC8 613 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 GJB7Q6PEY0 223 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 PAXIP1Q6ZW49 1069 aaPredicted RBP10.39□□□□□ -0.75
SYNE2-213ENST00000554805 ARFGAP2Q8N6H7 521 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 PBKQ96KB5 322 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 GANQ9H2C0 597 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 DDX4Q9NQI0 724 aaKnown RBP10.39□□□□□ -0.75
SYNE2-213ENST00000554805 AIPL1Q9NZN9 384 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 POLLQ9UGP5 575 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 PCDHGC5Q9Y5F6 944 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 IRS2Q9Y4H2 1338 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 NHSL1Q5SYE7 1610 aa10.39□□□□□ -0.75
SYNE2-213ENST00000554805 SART1O43290 800 aaKnown RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 RPL13P26373 211 aaKnown RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 TNFRSF8P28908 595 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 HOXA7P31268 230 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 ERVK-9P63128 1117 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 IFT88Q13099 833 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 SLFN13Q68D06 897 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 TBC1D16Q8TBP0 767 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 ZC3H12CQ9C0D7 883 aaKnown RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 LRRC4BQ9NT99 713 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 CHMP2AO43633 222 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 CACNB3P54284 484 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 SF3A3Q12874 501 aaKnown RBP eCLIP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 KNOP1Q1ED39 458 aaKnown RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 BHMT2Q9H2M3 363 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 KCTD10Q9H3F6 313 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 GCNT4Q9P109 453 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 AMACRQ9UHK6 382 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 NAGPAQ9UK23 515 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 NOC2LQ9Y3T9 749 aaKnown RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 BZW2Q9Y6E2 419 aaKnown RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 RSPH10B2B2RC85 870 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 HMGB1P1B2RPK0 211 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 BACH1O14867 736 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 PPP1R12BO60237 982 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-213ENST00000554805 PPP1R37O75864 691 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 FAM13AO94988 1023 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 SERPINB2P05120 415 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 RSPH10BP0C881 870 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 CASP4P49662 377 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 USP11P51784 963 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 ARHGAP4P98171 946 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 KDM7AQ6ZMT4 941 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 PPP4R3CPQ6ZMV5 832 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 MMS22LQ6ZRQ5 1243 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 ARHGAP27Q6ZUM4 889 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 CATSPER3Q86XQ3 398 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 SLFN12Q8IYM2 578 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 METTL13Q8N6R0 699 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 CCDC26Q8TAB7 109 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 REEP2Q9BRK0 252 aa10.38□□□□□ -0.75
SYNE2-213ENST00000554805 DLEC1Q9Y238 1755 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 DAPK3O43293 454 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 NR3C1P04150 777 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 IL1R1P14778 569 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 IBSPP21815 317 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 MDH1P40925 334 aaKnown RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 PLS1Q14651 629 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 KRT71Q3SY84 523 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 NLRP14Q86W24 1093 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 MYCT1Q8N699 235 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 CCT8L2Q96SF2 557 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 EPN3Q9H201 632 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 LTBP4Q8N2S1 1624 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 TLDC2A0PJX2 215 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 SMIM23A6NLE4 172 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 ITGA4P13612 1032 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 TAL1P17542 331 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 PON1P27169 355 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 HSD17B3P37058 310 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 USP8P40818 1118 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 EDRF1Q3B7T1 1238 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 ARSHQ5FYA8 562 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 C10orf76Q5T2E6 689 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 ZNF473Q8WTR7 871 aaKnown RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 ISCUQ9H1K1 167 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 FBXL5Q9UKA1 691 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 AMFRQ9UKV5 643 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 NOVA2Q9UNW9 492 aaKnown RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 GOLGA6L7A0A1B0GV03 622 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 TMEM110-MUSTN1A8MSY1 372 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 AKAP3O75969 853 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 HOXA13P31271 388 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 STAT1P42224 750 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 HDLBPQ00341 1268 aaKnown RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 GIT2Q14161 759 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 PTGISQ16647 500 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 ARHGAP44Q17R89 818 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 RUFY4Q6ZNE9 571 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 FRMD5Q7Z6J6 570 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 RDH13Q8NBN7 331 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 PIGOQ8TEQ8 1089 aa10.37□□□□□ -0.75
SYNE2-213ENST00000554805 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 CELF4Q9BZC1 486 aaKnown RBP10.37□□□□□ -0.75
SYNE2-213ENST00000554805 GLT8D2Q9H1C3 349 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms