RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 FAM86B2P0C5J1 330 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 KLRC1P26715 233 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 SREBF1P36956 1147 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 CLK2P49760 499 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 GATMP50440 423 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 NFX1Q12986 1120 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 KRT32Q14532 448 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 TSGA10IPQ3SY00 556 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 PAN2Q504Q3 1202 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 TMEM31Q5JXX7 168 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 MTHFD1LQ6UB35 978 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 Q6ZUG5 572 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 FAM178BQ8IXR5 827 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 TNPO1Q92973 898 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 ZNF689Q96CS4 500 aaPredicted RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 PABPC5Q96DU9 382 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 PPP1R16BQ96T49 567 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 CELF4Q9BZC1 486 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 IGFLR1Q9H665 355 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 RC3H2Q9HBD1 1191 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 ALG13Q9NP73 1137 aaKnown RBP13.07□□□□□ -0.32
NEK3-204ENST00000552973 DOCK5Q9H7D0 1870 aa13.07□□□□□ -0.32
NEK3-204ENST00000552973 MUC3AQ02505 3323 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 XIRP2A4UGR9 3374 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 C5orf67F2Z3F1 127 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 hCG_1984214I3L0E3 225 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 GTF2F1P35269 517 aaKnown RBP eCLIP13.06□□□□□ -0.32
NEK3-204ENST00000552973 METAP2P50579 478 aaKnown RBP eCLIP13.06□□□□□ -0.32
NEK3-204ENST00000552973 KRT76Q01546 638 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 PAK2Q13177 524 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 AP3B2Q13367 1082 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 CLUL1Q15846 466 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 PFKFB3Q16875 520 aaPredicted RBP13.06□□□□□ -0.32
NEK3-204ENST00000552973 SWSAP1Q6NVH7 229 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 ABHD15Q6UXT9 468 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 CCDC60Q8IWA6 550 aaPredicted RBP13.06□□□□□ -0.32
NEK3-204ENST00000552973 ZNF713Q8N859 430 aaPredicted RBP13.06□□□□□ -0.32
NEK3-204ENST00000552973 BRF1Q92994 677 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 JAKMIP1Q96N16 626 aaKnown RBP13.06□□□□□ -0.32
NEK3-204ENST00000552973 C11orf84Q9BUA3 381 aaPredicted RBP13.06□□□□□ -0.32
NEK3-204ENST00000552973 TMX1Q9H3N1 280 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 CDHR5Q9HBB8 845 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 ZNF302Q9NR11 478 aa13.06□□□□□ -0.32
NEK3-204ENST00000552973 MRPL42Q9Y6G3 142 aaKnown RBP13.06□□□□□ -0.32
NEK3-204ENST00000552973 IGKV6D-21A0A0A0MT36 114 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 SMIM35A0A1B0GVV1 85 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 PI4K2BG5E9Z4 385 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 DHX15O43143 795 aaKnown RBP13.05□□□□□ -0.32
NEK3-204ENST00000552973 SCG2P13521 617 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 DLX2Q07687 328 aaPredicted RBP13.05□□□□□ -0.32
NEK3-204ENST00000552973 HYAL1Q12794 435 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 FAM160B1Q5W0V3 765 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 PDXDC2PQ6P474 469 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 CKAP2LQ8IYA6 745 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 NME8Q8N427 588 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 RASGRP4Q8TDF6 673 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 ATP8B4Q8TF62 1192 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 CLP1Q92989 425 aaKnown RBP13.05□□□□□ -0.32
NEK3-204ENST00000552973 PHKBQ93100 1093 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 ZNF577Q9BSK1 485 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 FTHL17Q9BXU8 183 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 GLT8D2Q9H1C3 349 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 C11orf16Q9NQ32 467 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 LRFN2Q9ULH4 789 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 RWDD3Q9Y3V2 267 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 IGSF9BQ9UPX0 1349 aa13.05□□□□□ -0.32
NEK3-204ENST00000552973 IGLV3-22A0A075B6J6 115 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 IPO5O00410 1097 aaKnown RBP13.04□□□□□ -0.32
NEK3-204ENST00000552973 LINC01565O15544 149 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 HBP1O60381 514 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 MGEA5O60502 916 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 RPLP2P05387 115 aaKnown RBP13.04□□□□□ -0.32
NEK3-204ENST00000552973 HMGB1P09429 215 aaKnown RBP13.04□□□□□ -0.32
NEK3-204ENST00000552973 ATP4AP20648 1035 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 LTBRP36941 435 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 CAMK1Q14012 370 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 PKN1Q16512 942 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 PUS10Q3MIT2 529 aaKnown RBP13.04□□□□□ -0.32
NEK3-204ENST00000552973 MIS18BP1Q6P0N0 1132 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 NPAS4Q8IUM7 802 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 KIAA0319LQ8IZA0 1049 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 CRIPAKQ8N1N5 446 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 LMAN2LQ9H0V9 348 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 C6orf50Q9HD87 102 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 PLAGL2Q9UPG8 496 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 NOC2LQ9Y3T9 749 aaKnown RBP13.04□□□□□ -0.32
NEK3-204ENST00000552973 SNX14Q9Y5W7 946 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 SQORQ9Y6N5 450 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 MICAL3Q7RTP6 2002 aa13.04□□□□□ -0.32
NEK3-204ENST00000552973 CCDC196A0A1B0GTZ2 297 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 PRPF3O43395 683 aaKnown RBP13.03□□□□□ -0.32
NEK3-204ENST00000552973 GPR37L1O60883 481 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 RPS6KA5O75582 802 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 CYP3A4P08684 503 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 STAG3L1P0CL83 205 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 DNAJB1P25685 340 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 IRS1P35568 1242 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 SLC26A2P50443 739 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 BLOC1S2Q6QNY1 142 aa13.03□□□□□ -0.32
NEK3-204ENST00000552973 NIPA1Q7RTP0 329 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms