RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RBM5P52756 815 aaKnown RBP eCLIP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 KLHL30Q0D2K2 578 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 LRRC14Q15048 493 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 MSL1Q68DK7 614 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CNNM4Q6P4Q7 775 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 IRF2BP2Q7Z5L9 587 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CCDC84Q86UT8 332 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF483Q8TF39 744 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 LMBR1Q8WVP7 490 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 RPGRQ92834 1020 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TLCD1Q96CP7 247 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SPDL1Q96EA4 605 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CHMP6Q96FZ7 201 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CRAMP1Q96RY5 1269 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 PSMD1Q99460 953 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 PRMT1Q99873 361 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TACO1Q9BSH4 297 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 EBF2Q9HAK2 575 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 MLXIPLQ9NP71 852 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 OSGEPQ9NPF4 335 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 PNMA3Q9UL41 463 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 PAPPAQ13219 1627 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ARAP2Q8WZ64 1704 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TMCO5BA8MYB1 307 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TRAF5O00463 557 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 DIAPH2O60879 1101 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 UBOX5O94941 541 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 MMEP08473 750 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ABL2P42684 1182 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 USP11P51784 963 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TNNC1P63316 161 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 POU5F1Q01860 360 aaKnown RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 RNASELQ05823 741 aaKnown RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 GRIK3Q13003 919 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF211Q13398 564 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ZCWPW2Q504Y3 356 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 MEX3CQ5U5Q3 659 aaKnown RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ERICH1Q86X53 443 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF34Q8IZ26 560 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 RNF217Q8TC41 542 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 MAGEC3Q8TD91 643 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TBCKQ8TEA7 893 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF622Q969S3 477 aaKnown RBP eCLIP5.29□□□□□ -1.566e-8■□□□□ 9.1
LIMA1-214ENST00000552783 L3MBTL3Q96JM7 780 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 SELENOSQ9BQE4 189 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 BRIP1Q9BX63 1249 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 UBA5Q9GZZ9 404 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 KDM4CQ9H3R0 1056 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 BARHL2Q9NY43 387 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 CEP72Q9P209 647 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 CHORDC1Q9UHD1 332 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 MINPP1Q9UNW1 487 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 COL5A2P05997 1499 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 DLEC1Q9Y238 1755 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 CCDC88AQ3V6T2 1871 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 LRP5O75197 1615 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 IGSF9BQ9UPX0 1349 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 PPP1R12AO14974 1030 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 BAG3O95817 575 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 MYL1P05976 194 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 KRT16P08779 473 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 RARAP10276 462 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 CALML3P27482 149 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 EPS15P42566 896 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TNNI2P48788 182 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ALDH5A1P51649 535 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 CASP5P51878 434 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 PIGWQ7Z7B1 504 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 KCNV2Q8TDN2 545 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 PARD3BQ8TEW8 1205 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 NSUN4Q96CB9 384 aaKnown RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 FAM84BQ96KN1 310 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 FAM167BQ9BTA0 163 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TXLNGYQ9BZA5 131 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 FAM129AQ9BZQ8 928 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 GANQ9H2C0 597 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 RNF14Q9UBS8 474 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 A0A1B0GUL6 1792 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 UTRNP46939 3433 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 SRRM3A6NNA2 597 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 BIRC3Q13489 604 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 LLGL1Q15334 1064 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 USP17L2Q6R6M4 530 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 UNC13DQ70J99 1090 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 SV2BQ7L1I2 683 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 ZDHHC14Q8IZN3 488 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 GUF1Q8N442 669 aaKnown RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 SLC17A8Q8NDX2 589 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TPCN2Q8NHX9 752 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 EPS8L3Q8TE67 593 aaKnown RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 LARP4BQ92615 738 aaKnown RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 DNAJC19Q96DA6 116 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TMX4Q9H1E5 349 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 SEMA4AQ9H3S1 761 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 AZI2Q9H6S1 392 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 GPCPD1Q9NPB8 672 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 TSKSQ9UJT2 592 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 NAGPAQ9UK23 515 aa5.29□□□□□ -1.56
LIMA1-214ENST00000552783 CCNL1Q9UK58 526 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-214ENST00000552783 DBR1Q9UK59 544 aaKnown RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms