RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 BCAS3Q9H6U6 928 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 PPANQ9NQ55 473 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 PANK4Q9NVE7 773 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 AIPL1Q9NZN9 384 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 SEC63Q9UGP8 760 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 SLC12A6Q9UHW9 1150 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 AJAP1Q9UKB5 411 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 FAM170AA1A519 330 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 E7EVH7 732 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 KIF4AO95239 1232 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 FAM107AO95990 144 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 BTDP43251 543 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 NOVP48745 357 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 PSMD2Q13200 908 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 BYSLQ13895 437 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 HLTFQ14527 1009 aaKnown RBP eCLIP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 KRT79Q5XKE5 535 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 SPTY2D1Q68D10 685 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 LRRC47Q8N1G4 583 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 RBM46Q8TBY0 533 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 NCAPGQ9BPX3 1015 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 ANKRD2Q9GZV1 360 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 CENPHQ9H3R5 247 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 CD248Q9HCU0 757 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 LUC7LQ9NQ29 371 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 PLCB1Q9NQ66 1216 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 GEMIN8Q9NWZ8 242 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 VPS9D1Q9Y2B5 631 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 TNRC6CQ9HCJ0 1690 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 HMGB1P1B2RPK0 211 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 POTECB2RU33 542 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 SART1O43290 800 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 CEP104O60308 925 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 KIAA0754O94854 1291 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 HOXD13P35453 343 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 USP8P40818 1118 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 USP11P51784 963 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 ADCY7P51828 1080 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 MARSP56192 900 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 GSCP56915 257 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 KCNH2Q12809 1159 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 RPS6KA1Q15418 735 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 ASIC2Q16515 512 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 TMEM266Q2M3C6 531 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 ARSHQ5FYA8 562 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 RNF187Q5TA31 235 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 TTBK2Q6IQ55 1244 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 YTHDF3Q7Z739 585 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 CCDC13Q8IYE1 715 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 METTL13Q8N6R0 699 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 OLIG1Q8TAK6 271 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 PTCD2Q8WV60 388 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.93□□□□□ -1.462e-6■■■■■ 29
LIMA1-212ENST00000552491 CYFIP2Q96F07 1278 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 CELF4Q9BZC1 486 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 OSBPL7Q9BZF2 842 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 LRRC27Q9C0I9 530 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 GPCPD1Q9NPB8 672 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 KIAA1024Q9UPX6 916 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 NR2E1Q9Y466 385 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 SPATA31A1Q5TZJ5 1347 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 SRRM3A6NNA2 597 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 DNM1LO00429 736 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 DAPK3O43293 454 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 RASSF9O75901 435 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 BAG3O95817 575 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 SLURP2P0DP57 97 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 CYP11B2P19099 503 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 SMARCA1P28370 1054 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 STAT3P40763 770 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 CLK2P49760 499 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 RHBDL3P58872 404 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 TNNC1P63316 161 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 ACTN3Q08043 901 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 ADAM9Q13443 819 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 GJB7Q6PEY0 223 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 Q6ZNB5 142 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 MICALCLQ6ZW33 695 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 NBPF5PQ86XG9 351 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 ZC3H3Q8IXZ2 948 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 GPATCH11Q8N954 259 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 EIF1ADQ8N9N8 165 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 WDR66Q8TBY9 1149 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 CABS1Q96KC9 395 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 CEP63Q96MT8 703 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 VCPKMTQ9H867 229 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 DDX20Q9UHI6 824 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 AMACRQ9UHK6 382 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 DDX25Q9UHL0 483 aaKnown RBP5.93□□□□□ -1.46
LIMA1-212ENST00000552491 NAGPAQ9UK23 515 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 FBXL5Q9UKA1 691 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 NENFQ9UMX5 172 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 NHSQ6T4R5 1651 aa5.93□□□□□ -1.46
LIMA1-212ENST00000552491 H0YHG0 523 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 PLA2G4BP0C869 781 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 UCHL3P15374 230 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 HERC4Q5GLZ8 1057 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-212ENST00000552491 PPP4R3AQ6IN85 833 aa5.92□□□□□ -1.46
LIMA1-212ENST00000552491 TEX11Q8IYF3 940 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms