RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 NME9Q86XW9 330 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 NUP43Q8NFH3 380 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 PHOSPHO1Q8TCT1 267 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 RUNDC1Q96C34 613 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 ALPK1Q96QP1 1244 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 ZNF277Q9NRM2 450 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-210ENST00000552045 MYOTQ9UBF9 498 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 ASH2LQ9UBL3 628 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 TMEM59LQ9UK28 342 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 FRMPD2Q68DX3 1309 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-210ENST00000552045 RASSF10A6NK89 507 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 FOXP2O15409 715 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 NRDCO43847 1150 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 PRKCAP17252 672 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 MTNR1BP49286 362 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 SRSF2Q01130 221 aaKnown RBP7.93□□□□□ -1.14
LIMA1-210ENST00000552045 BNIP3Q12983 259 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 VPS72Q15906 364 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 IFIT1BQ5T764 474 aaKnown RBP7.93□□□□□ -1.14
LIMA1-210ENST00000552045 PJA1Q8NG27 643 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 SLC35G2Q8TBE7 412 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 CLEC4DQ8WXI8 215 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 PLCD4Q9BRC7 762 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 PDGFDQ9GZP0 370 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-210ENST00000552045 CSRNP2Q9H175 543 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 SEMA4AQ9H3S1 761 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 RC3H2Q9HBD1 1191 aaKnown RBP7.93□□□□□ -1.14
LIMA1-210ENST00000552045 DDX20Q9UHI6 824 aaKnown RBP7.93□□□□□ -1.14
LIMA1-210ENST00000552045 SAP30BPQ9UHR5 308 aaKnown RBP7.93□□□□□ -1.14
LIMA1-210ENST00000552045 GPR45Q9Y5Y3 372 aa7.93□□□□□ -1.14
LIMA1-210ENST00000552045 NOTOA8MTQ0 251 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 GLI4P10075 376 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 MANFP55145 182 aaKnown RBP7.92□□□□□ -1.14
LIMA1-210ENST00000552045 CHRNEQ04844 493 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 ZP2Q05996 745 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 KIR3DS1Q14943 382 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 CT83Q5H943 113 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 TOR2AQ5JU69 321 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 CABP7Q86V35 215 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 TRIM48Q8IWZ4 208 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 SEC14L1Q92503 715 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 ANO3Q9BYT9 981 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 SLC12A5Q9H2X9 1139 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 MAN1C1Q9NR34 630 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 USP25Q9UHP3 1055 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 PCDHB4Q9Y5E5 795 aa7.92□□□□□ -1.14
LIMA1-210ENST00000552045 A0A1W2PQJ5 194 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 PRAMEF25A6NGN4 478 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 AP1G1O43747 822 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 DYRK3O43781 588 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 OFD1O75665 1012 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 NBPF7P0C2Y1 421 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-210ENST00000552045 CLEC2LP0C7M8 214 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 C5AR1P21730 350 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 ADKP55263 362 aaKnown RBP7.91□□□□□ -1.14
LIMA1-210ENST00000552045 GALEQ14376 348 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 UGT8Q16880 541 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 MSMPQ1L6U9 139 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 IL31Q6EBC2 164 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 ESPNLQ6ZVH7 1005 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 KCNK18Q7Z418 384 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 DCP2Q8IU60 420 aaKnown RBP7.91□□□□□ -1.14
LIMA1-210ENST00000552045 SPPL2CQ8IUH8 684 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 PHYKPLQ8IUZ5 450 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 STK11IPQ8N1F8 1099 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 MIER2Q8N344 545 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 TTC17Q96AE7 1141 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 EAF2Q96CJ1 260 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-210ENST00000552045 TAAR9Q96RI9 348 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 QRSL1Q9H0R6 528 aaKnown RBP7.91□□□□□ -1.14
LIMA1-210ENST00000552045 C1orf112Q9NSG2 853 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 PPP2R3BQ9Y5P8 575 aa7.91□□□□□ -1.14
LIMA1-210ENST00000552045 SGSM2O43147 1006 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 OSMP13725 252 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 PHKG2P15735 406 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 HERVK_113P62684 666 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 PICALMQ13492 652 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.9□□□□□ -1.14
LIMA1-210ENST00000552045 COBLL1Q53SF7 1204 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 CYB5RLQ6IPT4 315 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 TSHZ1Q6ZSZ6 1077 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 SIRT2Q8IXJ6 389 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 C7orf31Q8N865 590 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 NETO2Q8NC67 525 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 PDZD8Q8NEN9 1154 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 BCL7CQ8WUZ0 217 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-210ENST00000552045 AP5M1Q9H0R1 490 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 EDARQ9UNE0 448 aa7.9□□□□□ -1.14
LIMA1-210ENST00000552045 TCRBV5S2A0A599 114 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 ANO9A1A5B4 782 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 ACOT7O00154 380 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 ELL2O00472 640 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 CTNND1O60716 968 aaKnown RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 NDUFS2O75306 463 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 TGFB1P01137 390 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 MMEP08473 750 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 IFIT2P09913 472 aaKnown RBP7.89□□□□□ -1.15
LIMA1-210ENST00000552045 FURINP09958 794 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 CD8BP10966 210 aa7.89□□□□□ -1.15
LIMA1-210ENST00000552045 NEK3P51956 506 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms