RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 LRRC2Q9BYS8 371 aa14.68□□□□□ -0.06
PTCH1-218ENST00000548945 ANO2Q9NQ90 1003 aa14.68□□□□□ -0.06
PTCH1-218ENST00000548945 TRPC6Q9Y210 931 aa14.68□□□□□ -0.06
PTCH1-218ENST00000548945 WDR81Q562E7 1941 aa14.68□□□□□ -0.06
PTCH1-218ENST00000548945 ZNF318Q5VUA4 2279 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 SMIM35A0A1B0GVV1 85 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 POTEB3A0JP26 581 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 FAM86C2PA6NEL3 165 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 C19orf67A6NJJ6 358 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 MEIS1O00470 390 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 ATG7O95352 703 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 STAG3L1P0CL83 205 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 SREBF1P36956 1147 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 STAT5BP51692 787 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 ADCY7P51828 1080 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 RCAN1P53805 252 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 NAPAP54920 295 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 FUT2Q10981 343 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 HYAL1Q12794 435 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 AP3B2Q13367 1082 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 POTEBQ6S5H4 581 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 EP400NLQ6ZTU2 488 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 NIPA1Q7RTP0 329 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 RTN4RL1Q86UN2 441 aaPredicted RBP14.67□□□□□ -0.06
PTCH1-218ENST00000548945 RAB11FIP4Q86YS3 637 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 CYP2W1Q8TAV3 490 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 PPP2R3CQ969Q6 453 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 POP1Q99575 1024 aaKnown RBP14.67□□□□□ -0.06
PTCH1-218ENST00000548945 ANO3Q9BYT9 981 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 CELF4Q9BZC1 486 aaKnown RBP14.67□□□□□ -0.06
PTCH1-218ENST00000548945 FAM49AQ9H0Q0 323 aaPredicted RBP14.67□□□□□ -0.06
PTCH1-218ENST00000548945 PADI3Q9ULW8 664 aa14.67□□□□□ -0.06
PTCH1-218ENST00000548945 FNDC1Q4ZHG4 1894 aaPredicted RBP14.67□□□□□ -0.06
PTCH1-218ENST00000548945 IGKV6D-21A0A0A0MT36 114 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 DCXO43602 365 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 ARP10275 920 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 EXOSC10Q01780 885 aaKnown RBP14.66□□□□□ -0.06
PTCH1-218ENST00000548945 PAK2Q13177 524 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 ITGB3BPQ13352 177 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-218ENST00000548945 SMAD2Q15796 467 aaKnown RBP14.66□□□□□ -0.06
PTCH1-218ENST00000548945 RTN1Q16799 776 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 TSGA10IPQ3SY00 556 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 TYW1BQ6NUM6 668 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 NEK1Q96PY6 1258 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 UPF3BQ9BZI7 483 aaKnown RBP14.66□□□□□ -0.06
PTCH1-218ENST00000548945 AGO4Q9HCK5 861 aaKnown RBP14.66□□□□□ -0.06
PTCH1-218ENST00000548945 RNF216Q9NWF9 866 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-218ENST00000548945 BARHL2Q9NY43 387 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 PLAGL2Q9UPG8 496 aa14.66□□□□□ -0.06
PTCH1-218ENST00000548945 COL1A2P08123 1366 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 STXBP3O00186 592 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 ZBTB43O43298 467 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 HBP1O60381 514 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 SCG2P13521 617 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 CLK2P49760 499 aaKnown RBP14.65□□□□□ -0.06
PTCH1-218ENST00000548945 KRT76Q01546 638 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 CAMK1Q14012 370 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 BMP2KLQ5H9B9 411 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 MTHFD1LQ6UB35 978 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 DHX32Q7L7V1 743 aaKnown RBP14.65□□□□□ -0.06
PTCH1-218ENST00000548945 ZBTB10Q96DT7 871 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 MRPL42Q9Y6G3 142 aaKnown RBP14.65□□□□□ -0.06
PTCH1-218ENST00000548945 PLXNA4Q9HCM2 1894 aa14.65□□□□□ -0.06
PTCH1-218ENST00000548945 SMCO2A6NFE2 343 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 IRX6P78412 446 aaPredicted RBP14.64□□□□□ -0.07
PTCH1-218ENST00000548945 ADAM15Q13444 863 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 SMAD4Q13485 552 aaKnown RBP14.64□□□□□ -0.07
PTCH1-218ENST00000548945 KRT32Q14532 448 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 CSPP1Q1MSJ5 1256 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 ODR4Q5SWX8 454 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 FAM160B1Q5W0V3 765 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 MCTP2Q6DN12 878 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 ABHD15Q6UXT9 468 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 ATP8B4Q8TF62 1192 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 TRAPPC12Q8WVT3 735 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 ALG13Q9NP73 1137 aaKnown RBP14.64□□□□□ -0.07
PTCH1-218ENST00000548945 BRPF3Q9ULD4 1205 aa14.64□□□□□ -0.07
PTCH1-218ENST00000548945 V9GY48 417 aaPredicted RBP14.64□□□□□ -0.07
PTCH1-218ENST00000548945 MBTPS2O43462 519 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 CCNE2O96020 404 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 ITGB1P05556 798 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 CYP3A4P08684 503 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 HMGB1P09429 215 aaKnown RBP14.63□□□□□ -0.07
PTCH1-218ENST00000548945 KLRC1P26715 233 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 ZNF76P36508 570 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 SARSP49591 514 aaKnown RBP14.63□□□□□ -0.07
PTCH1-218ENST00000548945 DLX2Q07687 328 aaPredicted RBP14.63□□□□□ -0.07
PTCH1-218ENST00000548945 TMEM62Q0P6H9 643 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 ZNF484Q5JVG2 852 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 SPPL3Q8TCT6 385 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 KCNH6Q9H252 994 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 TMX1Q9H3N1 280 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 CD207Q9UJ71 328 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 LRFN2Q9ULH4 789 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 TECTAO75443 2155 aa14.63□□□□□ -0.07
PTCH1-218ENST00000548945 ESYT2A0FGR8 921 aa14.62□□□□□ -0.07
PTCH1-218ENST00000548945 GOLGA8AA7E2F4 631 aa14.62□□□□□ -0.07
PTCH1-218ENST00000548945 GOLGA8BA8MQT2 603 aa14.62□□□□□ -0.07
PTCH1-218ENST00000548945 BACH1O14867 736 aa14.62□□□□□ -0.07
PTCH1-218ENST00000548945 DHX15O43143 795 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms