RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 HIC2Q96JB3 615 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 XPO6Q96QU8 1125 aaKnown RBP13.77□□□□□ -0.21
PTCH1-212ENST00000546744 FTOQ9C0B1 505 aaKnown RBP eCLIP13.77□□□□□ -0.21
PTCH1-212ENST00000546744 VCPKMTQ9H867 229 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 TBC1D23Q9NUY8 699 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 DCCP43146 1447 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 MST1RQ04912 1400 aa13.77□□□□□ -0.21
PTCH1-212ENST00000546744 SHPRHQ149N8 1683 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 NVLO15381 856 aaKnown RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 PALMO75781 387 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ATF7P17544 494 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ITIH4Q14624 930 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 KCNB1Q14721 858 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 NXNQ6DKJ4 435 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 CYP4F22Q6NT55 531 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 C16orf87Q6PH81 154 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ALKBH8Q96BT7 664 aaKnown RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 EDC3Q96F86 508 aaKnown RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 KCND1Q9NSA2 647 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 DAPK3O43293 454 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 STAM2O75886 525 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 SLCO1A2P46721 670 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 AP1B1Q10567 949 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ART3Q13508 389 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 C1orf146Q5VVC0 180 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 TTC13Q8NBP0 860 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ZNF653Q96CK0 615 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 IL17RAQ96F46 866 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 TGS1Q96RS0 853 aaKnown RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ST7Q9NRC1 585 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 TBC1D7Q9P0N9 293 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 TRPA1O75762 1119 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 RBM43Q6ZSC3 357 aaKnown RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 KRT26Q7Z3Y9 468 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ZNF589Q86UQ0 364 aaPredicted RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 FAM186BQ8IYM0 893 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 NGLY1Q96IV0 654 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 GOLPH3LQ9H4A5 285 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 APOBEC2Q9Y235 224 aaKnown RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ATP10DQ9P241 1426 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 MCF2LO15068 1137 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 GHRP10912 638 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 PRLRP16471 622 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 MRPS9P82933 396 aaKnown RBP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 GUCY1A3Q02108 690 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 UNC13DQ70J99 1090 aa13.76□□□□□ -0.21
PTCH1-212ENST00000546744 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.76□□□□□ -0.21
PTCH1-212ENST00000546744 ZNF142P52746 1687 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-212ENST00000546744 H0Y3Z8 333 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 KRT38O76015 456 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 NEK2P51955 445 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 ARFIP2P53365 341 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 PLS1Q14651 629 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 ADAT2Q7Z6V5 191 aaKnown RBP13.75□□□□□ -0.21
PTCH1-212ENST00000546744 ADAMTS1Q9UHI8 967 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 TRIM33Q9UPN9 1127 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 PPARDQ03181 441 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 LRRC31Q6UY01 552 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 OTUD6AQ7L8S5 288 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 RIBC1Q8N443 379 aaPredicted RBP13.75□□□□□ -0.21
PTCH1-212ENST00000546744 FAM133AQ8N9E0 248 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 TBC1D22AQ8WUA7 517 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 DYDC2Q96IM9 177 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 WWP1Q9H0M0 922 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 C10orf88Q9H8K7 445 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 NOD2Q9HC29 1040 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 MAGEA13PA6NCF6 341 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 KIRREL3Q8IZU9 778 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 TMEM206Q9H813 350 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 GGA2Q9UJY4 613 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 PTPN22Q9Y2R2 807 aa13.75□□□□□ -0.21
PTCH1-212ENST00000546744 PITPNM2Q9BZ72 1349 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 TTC26A0AVF1 554 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 PFDN6O15212 129 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 CDH16O75309 829 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 RPS6KA5O75582 802 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 GDAP1Q8TB36 358 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 TRIM56Q9BRZ2 755 aaKnown RBP13.74□□□□□ -0.21
PTCH1-212ENST00000546744 FMN2Q9NZ56 1722 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 PRDM1O75626 825 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 CD19P15391 556 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 STAT2P52630 851 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 PPM1KQ8N3J5 372 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 PYROXD1Q8WU10 500 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 ARHGEF10LQ9HCE6 1279 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 PPARGC1AQ9UBK2 798 aaKnown RBP13.74□□□□□ -0.21
PTCH1-212ENST00000546744 ENO4A6NNW6 628 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 BACH1O14867 736 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 KCNQ3O43525 872 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 PHKG2P15735 406 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 INPP1P49441 399 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 ARL4CP56559 192 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 TCIRG1Q13488 830 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 JADE1Q6IE81 842 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 SMYD4Q8IYR2 804 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-212ENST00000546744 STAG2Q8N3U4 1231 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 KDM4CQ9H3R0 1056 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 ZNF277Q9NRM2 450 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-212ENST00000546744 FBXL5Q9UKA1 691 aa13.74□□□□□ -0.21
PTCH1-212ENST00000546744 ZNF189O75820 626 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms