RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 TAF4BQ92750 862 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 NAGPAQ9UK23 515 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 PCDHB13Q9Y5F0 798 aa17.31■□□□□ 0.36
LDLR-204ENST00000545707 GDF11O95390 407 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 IKQ13123 557 aaPredicted RBP17.3■□□□□ 0.36
LDLR-204ENST00000545707 SIAH1Q8IUQ4 282 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 RUSC1Q9BVN2 902 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 CYP3A7-CYP3A51PA0A087WV96 503 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 KIF4AO95239 1232 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 XRCC5P13010 732 aaKnown RBP17.3■□□□□ 0.36
LDLR-204ENST00000545707 CYP3A7P24462 503 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 ERVK-9P63128 1117 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 GUCY1A3Q02108 690 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 HLTFQ14527 1009 aaKnown RBP eCLIP17.3■□□□□ 0.36
LDLR-204ENST00000545707 KSR1Q8IVT5 923 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 PIGOQ8TEQ8 1089 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 LENG9Q96B70 501 aa17.3■□□□□ 0.36
LDLR-204ENST00000545707 RNPC3Q96LT9 517 aaKnown RBP17.3■□□□□ 0.36
LDLR-204ENST00000545707 PITPNM2Q9BZ72 1349 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 ZBTB39O15060 712 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 GCNT3O95395 438 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 HOXA7P31268 230 aaPredicted RBP17.29■□□□□ 0.36
LDLR-204ENST00000545707 KIAA0825Q8IV33 1275 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 SLFN12Q8IYM2 578 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 SYT2Q8N9I0 419 aaPredicted RBP17.29■□□□□ 0.36
LDLR-204ENST00000545707 OR2W6PQ8NHA6 318 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 TEKT1Q969V4 418 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 CRAMP1Q96RY5 1269 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 TRAF3IP3Q9Y228 551 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 FAM169AQ9Y6X4 670 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 TMCO5BA8MYB1 307 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 POLRMTO00411 1230 aaKnown RBP17.29■□□□□ 0.36
LDLR-204ENST00000545707 EBAG9O00559 213 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 CERKLQ49MI3 558 aaPredicted RBP17.29■□□□□ 0.36
LDLR-204ENST00000545707 GBP6Q6ZN66 633 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 FRMD5Q7Z6J6 570 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 SP8Q8IXZ3 490 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 CRYGNQ8WXF5 182 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 MBOAT7Q96N66 472 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 DDX47Q9H0S4 455 aaKnown RBP17.29■□□□□ 0.36
LDLR-204ENST00000545707 CENPHQ9H3R5 247 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 DBNDD1Q9H9R9 158 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 ARFGEF1Q9Y6D6 1849 aa17.29■□□□□ 0.36
LDLR-204ENST00000545707 ASTN1O14525 1302 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 G3V3G9 751 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 EML1O00423 815 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 NR3C1P04150 777 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 RPA1P27694 616 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 LIG3P49916 1009 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 RBM5P52756 815 aaKnown RBP eCLIP17.28■□□□□ 0.36
LDLR-204ENST00000545707 EPHA7Q15375 998 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 DCAF8Q5TAQ9 597 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 PPP4R3CPQ6ZMV5 832 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 EPM2AIP1Q7L775 607 aaPredicted RBP17.28■□□□□ 0.36
LDLR-204ENST00000545707 MAATS1Q7Z4T9 603 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 LRRC57Q8N9N7 239 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 NAP1L4Q99733 375 aaKnown RBP17.28■□□□□ 0.36
LDLR-204ENST00000545707 SIX2Q9NPC8 291 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 TMEM59LQ9UK28 342 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 ADAMTSL1Q8N6G6 1762 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 MSH4O15457 936 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 ITGA4P13612 1032 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 CRKP46108 304 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 TNNC1P63316 161 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 SKOR1P84550 965 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 MICALL1Q8N3F8 863 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 METTL13Q8N6R0 699 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 SLC35C1Q96A29 364 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 NEUROG2Q9H2A3 272 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 GCNT4Q9P109 453 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 PLAAQ9Y263 795 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 TAF1LQ8IZX4 1826 aa17.28■□□□□ 0.36
LDLR-204ENST00000545707 SHTN1A0MZ66 631 aa17.27■□□□□ 0.36
LDLR-204ENST00000545707 F5H6K3 240 aa17.27■□□□□ 0.36
LDLR-204ENST00000545707 GFPT2O94808 682 aa17.27■□□□□ 0.36
LDLR-204ENST00000545707 KLRC3Q07444 240 aa17.27■□□□□ 0.36
LDLR-204ENST00000545707 CTTNQ14247 550 aaKnown RBP17.27■□□□□ 0.36
LDLR-204ENST00000545707 ZC2HC1CQ53FD0 456 aaPredicted RBP17.27■□□□□ 0.36
LDLR-204ENST00000545707 SH3BP5LQ7L8J4 393 aa17.27■□□□□ 0.36
LDLR-204ENST00000545707 U2AF1L4Q8WU68 220 aaKnown RBP17.27■□□□□ 0.36
LDLR-204ENST00000545707 PLCB1Q9NQ66 1216 aa17.27■□□□□ 0.36
LDLR-204ENST00000545707 SPDYE3A6NKU9 549 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 NDUFAB1O14561 156 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 CHMP2AO43633 222 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 ADRA2BP18089 450 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 NMT1P30419 496 aaKnown RBP17.27■□□□□ 0.35
LDLR-204ENST00000545707 JAG1P78504 1218 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 TTC31Q49AM3 519 aaPredicted RBP17.27■□□□□ 0.35
LDLR-204ENST00000545707 CEP85LQ5SZL2 805 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 SPICE1Q8N0Z3 855 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 TPCN2Q8NHX9 752 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 ERMNQ8TAM6 284 aa17.27■□□□□ 0.35
LDLR-204ENST00000545707 DDX3XO00571 662 aaKnown RBP eCLIP17.26■□□□□ 0.358e-9■□□□□ 10
LDLR-204ENST00000545707 PDXKO00764 312 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 SART1O43290 800 aaKnown RBP17.26■□□□□ 0.35
LDLR-204ENST00000545707 CALUO43852 315 aaPredicted RBP17.26■□□□□ 0.35
LDLR-204ENST00000545707 ECHS1P30084 290 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 FLT3P36888 993 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 ICA1Q05084 483 aa17.26■□□□□ 0.35
LDLR-204ENST00000545707 COG2Q14746 738 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms