RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 WNT8BQ93098 351 aa13.35□□□□□ -0.27
HDAC4-216ENST00000544989 MBOAT7Q96N66 472 aa13.35□□□□□ -0.27
HDAC4-216ENST00000544989 AIFM3Q96NN9 605 aa13.35□□□□□ -0.27
HDAC4-216ENST00000544989 KCNJ14Q9UNX9 436 aa13.35□□□□□ -0.27
HDAC4-216ENST00000544989 PCDHA2Q9Y5H9 948 aa13.35□□□□□ -0.27
HDAC4-216ENST00000544989 MAFBQ9Y5Q3 323 aaPredicted RBP13.35□□□□□ -0.27
HDAC4-216ENST00000544989 SQORQ9Y6N5 450 aa13.35□□□□□ -0.27
HDAC4-216ENST00000544989 SCN5AQ14524 2016 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 ADAMTS3O15072 1205 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 ST18O60284 1047 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 WDR5P61964 334 aaKnown RBP13.34□□□□□ -0.27
HDAC4-216ENST00000544989 IGBP1P78318 339 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 GPNMBQ14956 572 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 SAFBQ15424 915 aaKnown RBP eCLIP13.34□□□□□ -0.27
HDAC4-216ENST00000544989 INF2Q27J81 1249 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 PLEKHG4Q58EX7 1191 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 SWSAP1Q6NVH7 229 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 CKAP2LQ8IYA6 745 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 USP38Q8NB14 1042 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 FAM20AQ96MK3 541 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 TTYH1Q9H313 450 aaPredicted RBP13.34□□□□□ -0.27
HDAC4-216ENST00000544989 DISC1Q9NRI5 854 aa13.34□□□□□ -0.27
HDAC4-216ENST00000544989 DDX25Q9UHL0 483 aaKnown RBP13.34□□□□□ -0.27
HDAC4-216ENST00000544989 CHD9Q3L8U1 2897 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 SMIM35A0A1B0GVV1 85 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 GRXCR1A8MXD5 290 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 TBX3O15119 743 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 AMHP03971 560 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 CTSHP09668 335 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 FDPSP14324 419 aaKnown RBP13.33□□□□□ -0.28
HDAC4-216ENST00000544989 MBTPS1Q14703 1052 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 LETM2Q2VYF4 491 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 MARCH8Q5T0T0 291 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 MTHFD1LQ6UB35 978 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 HERC6Q8IVU3 1022 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 CCDC60Q8IWA6 550 aaPredicted RBP13.33□□□□□ -0.28
HDAC4-216ENST00000544989 FAM161BQ96MY7 647 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 GAS2L1Q99501 681 aaPredicted RBP13.33□□□□□ -0.28
HDAC4-216ENST00000544989 CDX2Q99626 313 aaPredicted RBP13.33□□□□□ -0.28
HDAC4-216ENST00000544989 NRBP2Q9NSY0 501 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 TET1Q8NFU7 2136 aa13.33□□□□□ -0.28
HDAC4-216ENST00000544989 MAGEB2O15479 319 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 TLL1O43897 1013 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 MARCH6O60337 910 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 DKC1O60832 514 aaKnown RBP eCLIP13.32□□□□□ -0.285e-7■■■■■ 34.7
HDAC4-216ENST00000544989 PSMD10O75832 226 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 BAG4O95429 457 aaKnown RBP13.32□□□□□ -0.28
HDAC4-216ENST00000544989 LARGE1O95461 756 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 MMP1P03956 469 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 PBX2P40425 430 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 MRPS6P82932 125 aaKnown RBP13.32□□□□□ -0.28
HDAC4-216ENST00000544989 ODR4Q5SWX8 454 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 PPP2R2DQ66LE6 453 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 RUFY4Q6ZNE9 571 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 PIK3AP1Q6ZUJ8 805 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 MIER3Q7Z3K6 550 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 DBF4BQ8NFT6 615 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 ETNPPLQ8TBG4 499 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 DNAJB3Q8WWF6 145 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 ZBED2Q9BTP6 218 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 IFIH1Q9BYX4 1025 aaKnown RBP13.32□□□□□ -0.28
HDAC4-216ENST00000544989 NKX2-4Q9H2Z4 354 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 GABBR1Q9UBS5 961 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 KIF3AQ9Y496 699 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 IGSF9BQ9UPX0 1349 aa13.32□□□□□ -0.28
HDAC4-216ENST00000544989 PIEZO1Q92508 2521 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 EDIL3O43854 480 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 CCNT1O60563 726 aaKnown RBP13.31□□□□□ -0.28
HDAC4-216ENST00000544989 TDP2O95551 362 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 CHRNA1P02708 482 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 FOSL2P15408 326 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 KLRC1P26715 233 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 TMOD1P28289 359 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 MCM2P49736 904 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 MGAT3Q09327 533 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 TSHZ1Q6ZSZ6 1077 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 SLFN12Q8IYM2 578 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 RAD9AQ99638 391 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 KIF2CQ99661 725 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 FTHL17Q9BXU8 183 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 RNF216Q9NWF9 866 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-216ENST00000544989 YBX2Q9Y2T7 364 aaKnown RBP13.31□□□□□ -0.28
HDAC4-216ENST00000544989 TRPV2Q9Y5S1 764 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 KDM3AQ9Y4C1 1321 aa13.31□□□□□ -0.28
HDAC4-216ENST00000544989 MYH9P35579 1960 aaKnown RBP13.31□□□□□ -0.28
HDAC4-216ENST00000544989 CHMP2AO43633 222 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 GJB5O95377 273 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 OATP04181 439 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 RABGGTBP53611 331 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 PPP2R5CQ13362 524 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 GRIN2CQ14957 1233 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 FBXO47Q5MNV8 452 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 KRT40Q6A162 431 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 CCDC83Q8IWF9 413 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 DIS3L2Q8IYB7 885 aaKnown RBP13.3□□□□□ -0.28
HDAC4-216ENST00000544989 EXOC8Q8IYI6 725 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 FAM184AQ8NB25 1140 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 OXER1Q8TDS5 423 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 C8orf76Q96K31 380 aa13.3□□□□□ -0.28
HDAC4-216ENST00000544989 FAM49AQ9H0Q0 323 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms