RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 MIGA1Q8NAN2 632 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 TCP11Q8WWU5 503 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 JARID2Q92833 1246 aaPredicted RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 CNOT6LQ96LI5 555 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 MTRQ99707 1265 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ANO3Q9BYT9 981 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 TMEM51Q9NW97 253 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PI4KBQ9UBF8 816 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 MROH7Q68CQ1 1323 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PSMD3O43242 534 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 KPNA6O60684 536 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 LIG4P49917 911 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 STX1BP61266 288 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PTK2Q05397 1052 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 KLHL38Q2WGJ6 581 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 MAP1SQ66K74 1059 aaPredicted RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 KCNV1Q6PIU1 500 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 FBXO11Q86XK2 927 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 NT5C1BQ96P26 610 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PCDHA7Q9UN72 937 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 IPPQ9Y573 584 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ARHGAP15Q53QZ3 475 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 C4orf22Q6V702 233 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 PIK3R5Q8WYR1 880 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 LRRC37BQ96QE4 947 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 SLF1Q9BQI6 1058 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 SRP68Q9UHB9 627 aaKnown RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 PTPRUQ92729 1446 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 IQSEC2Q5JU85 1478 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 TLDC2A0PJX2 215 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 SH3BP5O60239 455 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 MGEA5O60502 916 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 AMHP03971 560 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 PIK3CAP42336 1068 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 MAP2K5Q13163 448 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 EXOC3L4Q17RC7 722 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 Q3C1V9 767 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 ANGEL2Q5VTE6 544 aaKnown RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 STAG1Q8WVM7 1258 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 LARP4BQ92615 738 aaKnown RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 STAMQ92783 540 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 OLFM3Q96PB7 478 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 TSEN34Q9BSV6 310 aaKnown RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 GPCPD1Q9NPB8 672 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 A6NJR5 290 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 K7ENM7 598 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 SLC25A27O95847 323 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 NSFP46459 744 aaKnown RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 CTDSPL2Q05D32 466 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 ALX1Q15699 326 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 FSCBQ5H9T9 825 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 PDXDC1Q6P996 788 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 TRIM72Q6ZMU5 477 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 SEPT14Q6ZU15 432 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 TMTC3Q6ZXV5 915 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 FAM227BQ96M60 508 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 FOXP3Q9BZS1 431 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 RGL2O15211 777 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 EFCAB14O75071 495 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 ABL1P00519 1130 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 PAMP19021 973 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 BFSP1Q12934 665 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 LMBRD2Q68DH5 695 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 GPT2Q8TD30 523 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.42□□□□□ -1.062e-7■■■■■ 62.8
VPS13D-211ENST00000543710 RBM41Q96IZ5 413 aaKnown RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 FRMD8P1Q9BZ68 369 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 KIF9Q9HAQ2 790 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 RRAGDQ9NQL2 400 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-211ENST00000543710 STARD7Q9NQZ5 370 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 IRAK4Q9NWZ3 460 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 TMEM63CQ9P1W3 806 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 ANGPTL3Q9Y5C1 460 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 PCDHA1Q9Y5I3 950 aa8.42□□□□□ -1.06
VPS13D-211ENST00000543710 ZC3H4Q9UPT8 1303 aaKnown RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 KCNK3O14649 394 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 ADD2P35612 726 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 CDC42EP1Q00587 391 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SCARF1Q14162 830 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 UAP1Q16222 522 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 PREPLQ4J6C6 727 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 ACSF2Q96CM8 615 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 YME1L1Q96TA2 773 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 LARP6Q9BRS8 491 aaKnown RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 MOV10L1Q9BXT6 1211 aaKnown RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SLC7A5P2Q9GIP4 190 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 MAN1B1Q9UKM7 699 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 PPP1R9AQ9ULJ8 1098 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 TESPA1A2RU30 521 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L10C9JJH3 530 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 GADD45BO75293 160 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 TTLL1O95922 423 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SKIP12755 728 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 TBCCQ15814 346 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SEPT8Q92599 483 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 OSBPL5Q9H0X9 879 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SEL1LQ9UBV2 794 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 DDX41Q9UJV9 622 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms