RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	PPP4R3A	Q6IN85	833 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	MOXD1	Q6UVY6	613 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	FBXO18	Q8NFZ0	1043 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	ETNPPL	Q8TBG4	499 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	ATP8B4	Q8TF62	1192 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	HERVK_113	Q902F9	699 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	TNFRSF25	Q93038	417 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	SH2D3A	Q9BRG2	576 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	NRBP2	Q9NSY0	501 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	SCN5A	Q14524	2016 aa		12.45	□□□□□ -0.42
DDB1-222	ENST00000543627	IGKV6D-21	A0A0A0MT36	114 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627		M0QZ92	97 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	NEMF	O60524	1076 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	PFKM	P08237	780 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	ATP4A	P20648	1035 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	SFN	P31947	248 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	KCNJ6	P48051	423 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	SLC26A2	P50443	739 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	RABGGTB	P53611	331 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	UGCG	Q16739	394 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	MARCH8	Q5T0T0	291 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	FAM109B	Q6ICB4	259 aa	Predicted RBP	12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	FAM117B	Q6P1L5	589 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	TAF2	Q6P1X5	1199 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	MTHFD1L	Q6UB35	978 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	DEFB123	Q8N688	67 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	FAM20A	Q96MK3	541 aa		12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	NOL7	Q9UMY1	257 aa	Known RBP	12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	MAFB	Q9Y5Q3	323 aa	Predicted RBP	12.44	□□□□□ -0.42
DDB1-222	ENST00000543627	KIF28P	B7ZC32	967 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	EML1	O00423	815 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	WNT7A	O00755	349 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	OAT	P04181	439 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	GHR	P10912	638 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	PBX2	P40425	430 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	ADAM17	P78536	824 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	PRKCE	Q02156	737 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	IKBKE	Q14164	716 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	MTERF2	Q49AM1	385 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	ZNF484	Q5JVG2	852 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	ZNF697	Q5TEC3	545 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	LARP1B	Q659C4	914 aa	Known RBP	12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	TMCO2	Q7Z6W1	182 aa	Predicted RBP	12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	SLFN12	Q8IYM2	578 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	DBF4B	Q8NFT6	615 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	BBX	Q8WY36	941 aa	Predicted RBP	12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	HAS1	Q92839	578 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	MBOAT7	Q96N66	472 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	ZBED2	Q9BTP6	218 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	FOXP1	Q9H334	677 aa	Predicted RBP	12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	SUGCT	Q9HAC7	445 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	MSRA	Q9UJ68	235 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	PCDHA12	Q9UN75	941 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	CDY2A	Q9Y6F7	541 aa		12.43	□□□□□ -0.42
DDB1-222	ENST00000543627	TMEM150B	A6NC51	233 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	PARN	O95453	639 aa	Known RBP	12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	CHRNA1	P02708	482 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	ATP2A2	P16615	1042 aa	Known RBP	12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	HOXC8	P31273	242 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	CYP4A11	Q02928	519 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	CTTN	Q14247	550 aa	Known RBP	12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	NBR1	Q14596	966 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	MBTPS1	Q14703	1052 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	GPNMB	Q14956	572 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	TTC38	Q5R3I4	469 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	IER5	Q5VY09	327 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	CNKSR3	Q6P9H4	555 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	NOSTRIN	Q8IVI9	506 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	TPH2	Q8IWU9	490 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	LRRC71	Q8N4P6	559 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	IL27	Q8NEV9	243 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	VWCE	Q96DN2	955 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	DYDC2	Q96IM9	177 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	ZNF668	Q96K58	619 aa	Predicted RBP	12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	FAM167A	Q96KS9	214 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	OSBPL7	Q9BZF2	842 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	TTC12	Q9H892	705 aa	Predicted RBP	12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	KCNMB3	Q9NPA1	279 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	CEP131	Q9UPN4	1083 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	AKT3	Q9Y243	479 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	PCDHA2	Q9Y5H9	948 aa		12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	LAMA2	P24043	3122 aa	Known RBP	12.42	□□□□□ -0.42
DDB1-222	ENST00000543627	VPS37C	A5D8V6	355 aa	Predicted RBP	12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	TBX3	O15119	743 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	ZNF862	O60290	1169 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	UPP2	O95045	317 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	VTN	P04004	478 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	MYOG	P15173	224 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	TEC	P42680	631 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	PSMC5	P62195	406 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	MRPS6	P82932	125 aa	Known RBP	12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	SMAD3	P84022	425 aa	Known RBP	12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	RBL2	Q08999	1139 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	TCTN1	Q2MV58	587 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	EFCAB12	Q6NXP0	572 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	TRAF7	Q6Q0C0	670 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	SEPT8	Q92599	483 aa		12.41	□□□□□ -0.42
DDB1-222	ENST00000543627	TIFA	Q96CG3	184 aa		12.41	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms