RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CCDC175P0C221 793 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 DSG3P32926 999 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 HNRNPH2P55795 449 aaKnown RBP10.65□□□□□ -0.7
CLIP1-212ENST00000540304 MRPS9P82933 396 aaKnown RBP10.65□□□□□ -0.7
CLIP1-212ENST00000540304 COG2Q14746 738 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 PGM5Q15124 567 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 RINT1Q6NUQ1 792 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 RAD9BQ6WBX8 426 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 RINLQ6ZS11 566 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 SFR1Q86XK3 245 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 NELFCDQ8IXH7 590 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 PIGOQ8TEQ8 1089 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 NACC1Q96RE7 527 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 TAAR1Q96RJ0 339 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 ERGIC2Q96RQ1 377 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 KCTD10Q9H3F6 313 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 AGO4Q9HCK5 861 aaKnown RBP10.65□□□□□ -0.7
CLIP1-212ENST00000540304 MED4Q9NPJ6 270 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 LUC7L2Q9Y383 392 aaKnown RBP10.65□□□□□ -0.7
CLIP1-212ENST00000540304 AFG3L2Q9Y4W6 797 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 COL4A3BPQ9Y5P4 624 aa10.65□□□□□ -0.7
CLIP1-212ENST00000540304 TRAF5O00463 557 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 GAP43P17677 238 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 EIF2AK2P19525 551 aaKnown RBP10.65□□□□□ -0.71
CLIP1-212ENST00000540304 ETF1P62495 437 aaKnown RBP10.65□□□□□ -0.71
CLIP1-212ENST00000540304 MTMR1Q13613 665 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 MTF1Q14872 753 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 PPP2R5AQ15172 486 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 SYCP1Q15431 976 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 CYP26C1Q6V0L0 522 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 NSMFQ6X4W1 530 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 CATSPERGQ6ZRH7 1159 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 RMDN3Q96TC7 470 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 DESI2Q9BSY9 194 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 NDST4Q9H3R1 872 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 PXMP2Q9NR77 195 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 RNF181Q9P0P0 153 aa10.65□□□□□ -0.71
CLIP1-212ENST00000540304 OTOFQ9HC10 1997 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 USP2O75604 605 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 GNA14O95837 355 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 MTA1Q13330 715 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 EDRF1Q3B7T1 1238 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 FIGNQ5HY92 759 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 SNRNP48Q6IEG0 339 aaKnown RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 SYT10Q6XYQ8 523 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 EPM2AIP1Q7L775 607 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 OR8K1Q8NGG5 319 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 IQCDQ96DY2 449 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 DNAJC7Q99615 494 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 PDCD2LQ9BRP1 358 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 LXNQ9BS40 222 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 TTYH3Q9C0H2 523 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 POLD4Q9HCU8 107 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 KCND2Q9NZV8 630 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 RIPK3Q9Y572 518 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 PHLPP2Q6ZVD8 1323 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 PTPRFP10586 1907 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 LOC285556D6RIA3 1793 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 RSPH10B2B2RC85 870 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 DDX39AO00148 427 aaKnown RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 ATP2A1O14983 1001 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 DHX15O43143 795 aaKnown RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 RSPH10BP0C881 870 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 TRIM21P19474 475 aaKnown RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 CASP5P51878 434 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 ERVK-24P63145 666 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 PRKG1Q13976 671 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 C1orf186Q6ZWK4 172 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 MIER3Q7Z3K6 550 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 ZC3H3Q8IXZ2 948 aaKnown RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 RBM46Q8TBY0 533 aaKnown RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 DCPSQ96C86 337 aaKnown RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 PCMTD1Q96MG8 357 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 OLFML3Q9NRN5 406 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 PKD2L1Q9P0L9 805 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 WRAP73Q9P2S5 460 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 ZNF214Q9UL59 606 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-212ENST00000540304 ADGRG1Q9Y653 693 aa10.64□□□□□ -0.71
CLIP1-212ENST00000540304 MYPNQ86TC9 1320 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 A0A0U1RQJ8 604 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 A0A1W2PQJ5 194 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 FAM13AO94988 1023 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 MYCLP12524 364 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 ITGB3BPQ13352 177 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 BAATQ14032 418 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 KNOP1Q1ED39 458 aaKnown RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 BMT2Q1RMZ1 405 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 TSR1Q2NL82 804 aaKnown RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 CCDC40Q4G0X9 1142 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 SH3D19Q5HYK7 790 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 ARHGEF16Q5VV41 709 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 XRRA1Q6P2D8 792 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 TRIM65Q6PJ69 517 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 GPIHBP1Q8IV16 184 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 SULF1Q8IWU6 871 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 ATRIPQ8WXE1 791 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 MRPL44Q9H9J2 332 aaKnown RBP10.63□□□□□ -0.71
CLIP1-212ENST00000540304 TBC1D22BQ9NU19 505 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 SNCAIPQ9Y6H5 919 aa10.63□□□□□ -0.71
CLIP1-212ENST00000540304 RASSF10A6NK89 507 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms