RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 FSTL4Q6MZW2 842 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 EP400NLQ6ZTU2 488 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 IFNL2Q8IZJ0 200 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 NEIL1Q96FI4 390 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-213ENST00000539950 CDK5RAP1Q96SZ6 601 aaKnown RBP5.53□□□□□ -1.52
VPS13A-213ENST00000539950 CARD11Q9BXL7 1154 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 INCENPQ9NQS7 918 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 NDOR1Q9UHB4 597 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 CUTAO60888 179 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 CLASP2O75122 1294 aaKnown RBP5.52□□□□□ -1.53
VPS13A-213ENST00000539950 RASGRP1O95267 797 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 PTGS1P23219 599 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 RRADP55042 308 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 RBL2Q08999 1139 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 RNF151Q2KHN1 245 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 WDR72Q3MJ13 1102 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 DPP8Q6V1X1 898 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-213ENST00000539950 TAX1BP1Q86VP1 789 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 CISD2Q8N5K1 135 aaKnown RBP5.52□□□□□ -1.53
VPS13A-213ENST00000539950 GSTCDQ8NEC7 633 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 SLC7A14Q8TBB6 771 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 ARMC5Q96C12 935 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 DNAJC7Q99615 494 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 GALNT8Q9NY28 637 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 COQ6Q9Y2Z9 468 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 TCAF1Q9Y4C2 921 aa5.52□□□□□ -1.53
VPS13A-213ENST00000539950 MUSKO15146 869 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 GSTA4O15217 222 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 MPIG6BO95866 241 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 FSHBP01225 129 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 C6P13671 934 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 ADCY8P40145 1251 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 NOLC1Q14978 699 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS13A-213ENST00000539950 SPDYAQ5MJ70 313 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 LRP10Q7Z4F1 713 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 NOSTRINQ8IVI9 506 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 Q8N1X5 172 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 SLC16A11Q8NCK7 471 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 GIMAP8Q8ND71 665 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-213ENST00000539950 SCLYQ96I15 445 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 AMNQ9BXJ7 453 aa5.51□□□□□ -1.53
VPS13A-213ENST00000539950 ZFR2Q9UPR6 939 aaKnown RBP5.51□□□□□ -1.53
VPS13A-213ENST00000539950 SCDO00767 359 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 MMEP08473 750 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 ETV4P43268 484 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 RAC3P60763 192 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 HERVK_113P62684 666 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 STILQ15468 1287 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 ZC3H12BQ5HYM0 836 aaKnown RBP5.5□□□□□ -1.53
VPS13A-213ENST00000539950 LRSAM1Q6UWE0 723 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 LARP4Q71RC2 724 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS13A-213ENST00000539950 WNK4Q96J92 1243 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 SRPK1Q96SB4 655 aaKnown RBP5.5□□□□□ -1.53
VPS13A-213ENST00000539950 ZDHHC5Q9C0B5 715 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 UCKL1Q9NWZ5 548 aa5.5□□□□□ -1.53
VPS13A-213ENST00000539950 RASSF10A6NK89 507 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 MATN2O00339 956 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 EFCAB14O75071 495 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 TACR2P21452 398 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 KCNQ1P51787 676 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 TBR1Q16650 682 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 ZNF568Q3ZCX4 644 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 TRIM61Q5EBN2 209 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 CRIP3Q6Q6R5 217 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 CXXC5Q7LFL8 322 aaKnown RBP5.49□□□□□ -1.53
VPS13A-213ENST00000539950 OVCH1Q7RTY7 1134 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 FUKQ8N0W3 1084 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 JMYQ8N9B5 988 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 ZNF747Q9BV97 191 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 SCAND2PQ9GZW5 306 aaPredicted RBP5.49□□□□□ -1.53
VPS13A-213ENST00000539950 KIAA1683Q9H0B3 1180 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 SFMBT1Q9UHJ3 866 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 CDC42EP3Q9UKI2 254 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 OAZ3Q9UMX2 235 aa5.49□□□□□ -1.53
VPS13A-213ENST00000539950 AMHP03971 560 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 HMGCRP04035 888 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 ECE1P42892 770 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 CD83Q01151 205 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 ZMAT1Q5H9K5 638 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 KANK2Q63ZY3 851 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 ABHD17CQ6PCB6 329 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 FGD2Q7Z6J4 655 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 ASB15Q8WXK1 588 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 MAGEB10Q96LZ2 347 aaPredicted RBP5.48□□□□□ -1.53
VPS13A-213ENST00000539950 DPYSL5Q9BPU6 564 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 BTBD2Q9BX70 525 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 CELF4Q9BZC1 486 aaKnown RBP5.48□□□□□ -1.53
VPS13A-213ENST00000539950 VPS11Q9H270 941 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 NR2E1Q9Y466 385 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 TESMINQ9Y4I5 508 aa5.48□□□□□ -1.53
VPS13A-213ENST00000539950 KCNA6P17658 529 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 CR2P20023 1033 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 EIF4HQ15056 248 aaKnown RBP5.47□□□□□ -1.53
VPS13A-213ENST00000539950 OTOP2Q7RTS6 562 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 BRAPQ7Z569 592 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 PMFBP1Q8TBY8 1022 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 DLG3Q92796 817 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 SCYL1Q96KG9 808 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 ADOQ96SZ5 270 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 OR10A5Q9H207 317 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms