RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 BMP8BP34820 402 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 GRIA2P42262 883 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 RAB27AP51159 221 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 ZNF143P52747 638 aaPredicted RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 CYP4F3Q08477 520 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 SART3Q15020 963 aaKnown RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 MTERF2Q49AM1 385 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 CCDC152Q4G0S7 254 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 TADA2BQ86TJ2 420 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 CEP57Q86XR8 500 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 TRIM59Q8IWR1 403 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 MYO1HQ8N1T3 1032 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 Q8N3U1 123 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 LINC00116Q8NCU8 138 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 C1orf131Q8NDD1 294 aaKnown RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 CTCFLQ8NI51 663 aaPredicted RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 USP33Q8TEY7 942 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 TBC1D5Q92609 795 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 SAAL1Q96ER3 474 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 RCC1LQ96I51 464 aaKnown RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 MPP4Q96JB8 637 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 DNAJC7Q99615 494 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 SH3GL1Q99961 368 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 MBNL3Q9NUK0 354 aaKnown RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 AP5S1Q9NUS5 200 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 LMCD1Q9NZU5 365 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 ZMYM5Q9UJ78 669 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 LRRFIP2Q9Y608 721 aaKnown RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 OAS3Q9Y6K5 1087 aaKnown RBP6.2□□□□□ -1.42
CD44-236ENST00000533222 WDR97A6NE52 1622 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 CCDC171Q6TFL3 1326 aa6.2□□□□□ -1.42
CD44-236ENST00000533222 EIF3CLB5ME19 914 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 KIAA0754O94854 1291 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 MAP4K4O95819 1239 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 HNRNPCP07910 306 aaKnown RBP eCLIP6.19□□□□□ -1.42
CD44-236ENST00000533222 RNASE1P07998 156 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 VIL1P09327 827 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 GSTM1P09488 218 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 NAT2P11245 290 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 TNNT1P13805 278 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ZFXP17010 805 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 CCNCP24863 283 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 RPL10P27635 214 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 GCLCP48506 637 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 CEBPAP49715 358 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 NEK2P51955 445 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 GP2P55259 537 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 SH3BGRP55822 239 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 PCBP3P57721 371 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 RAB3GAP1Q15042 981 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 SF1Q15637 639 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 ZNF792Q3KQV3 632 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 YOD1Q5VVQ6 348 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 CDCA2Q69YH5 1023 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 CCDC70Q6NSX1 233 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 WAPLQ7Z5K2 1190 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 WDR63Q8IWG1 891 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 CCDC65Q8IXS2 484 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ST13P5Q8NFI4 369 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 MAML1Q92585 1016 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ARHGAP45Q92619 1136 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 PPP2R3CQ969Q6 453 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 LRRC45Q96CN5 670 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ERO1AQ96HE7 468 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 SCLT1Q96NL6 688 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 FCRL3Q96P31 734 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 EIF3CQ99613 913 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 G6PC3Q9BUM1 346 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 LRRCC1Q9C099 1032 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ADAMTS10Q9H324 1103 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 RPAP3Q9H6T3 665 aaPredicted RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 KANSL2Q9H9L4 492 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ARHGEF4Q9NR80 690 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 C19orf73Q9NVV2 129 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 LRP2BPQ9P2M1 347 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ZMAT5Q9UDW3 170 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 DIS3Q9Y2L1 958 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 SF3B6Q9Y3B4 125 aaKnown RBP6.19□□□□□ -1.42
CD44-236ENST00000533222 TTLL3Q9Y4R7 772 aa6.19□□□□□ -1.42
CD44-236ENST00000533222 ERICH4A6NGS2 130 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 TRIM64CA6NLI5 447 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 KIF3BO15066 747 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 MYL1P05976 194 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 MMEP08473 750 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 CYP11B2P19099 503 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 TRIM21P19474 475 aaKnown RBP6.18□□□□□ -1.42
CD44-236ENST00000533222 GPTP24298 496 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 RPL13P26373 211 aaKnown RBP6.18□□□□□ -1.42
CD44-236ENST00000533222 FNTAP49354 379 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 CLK1P49759 484 aaKnown RBP6.18□□□□□ -1.42
CD44-236ENST00000533222 CCT8P50990 548 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 PPP2R2AP63151 447 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 SSRP1Q08945 709 aaKnown RBP6.18□□□□□ -1.42
CD44-236ENST00000533222 EIF4A2Q14240 407 aaKnown RBP6.18□□□□□ -1.42
CD44-236ENST00000533222 E2F5Q15329 346 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 PRSS53Q2L4Q9 553 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 CCDC57Q2TAC2 916 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 USH1GQ495M9 461 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 SPDYCQ5MJ68 293 aa6.18□□□□□ -1.42
CD44-236ENST00000533222 CWF19L1Q69YN2 538 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms