RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 SCNN1BP51168 640 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 KIF11P52732 1056 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 PFKPQ01813 784 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 RTP5Q14D33 572 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 TMEM132BQ14DG7 1078 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 PKN1Q16512 942 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 CATSPEREQ5SY80 951 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 RNF187Q5TA31 235 aaPredicted RBP6.69□□□□□ -1.34
CD44-230ENST00000528922 DACT3Q96B18 629 aaPredicted RBP6.69□□□□□ -1.34
CD44-230ENST00000528922 PWWP2AQ96N64 755 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.69□□□□□ -1.34
CD44-230ENST00000528922 SLC39A2Q9NP94 309 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 BTBD7Q9P203 1132 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 PMF1-BGLAPU3KQ54 211 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 GAPVD1Q14C86 1478 aa6.69□□□□□ -1.34
CD44-230ENST00000528922 RAPGEF2Q9Y4G8 1499 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 ZNF839A8K0R7 811 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 H7C1D1 291 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 MMEP08473 750 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 SLC9A1P19634 815 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 HERVK_113P62684 666 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 SMAD4Q13485 552 aaKnown RBP6.68□□□□□ -1.34
CD44-230ENST00000528922 DHCR24Q15392 516 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 PHF19Q5T6S3 580 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 CC2D1AQ6P1N0 951 aaPredicted RBP6.68□□□□□ -1.34
CD44-230ENST00000528922 AFAP1L2Q8N4X5 818 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 KIAA1958Q8N8K9 716 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 KYQ8NBH2 561 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 OR2W6PQ8NHA6 318 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 ZBTB8AQ96BR9 441 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 GPR101Q96P66 508 aaPredicted RBP6.68□□□□□ -1.34
CD44-230ENST00000528922 ELF4Q99607 663 aaPredicted RBP6.68□□□□□ -1.34
CD44-230ENST00000528922 TMX1Q9H3N1 280 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 PCDH18Q9HCL0 1135 aa6.68□□□□□ -1.34
CD44-230ENST00000528922 SPATA6Q9NWH7 488 aaPredicted RBP6.68□□□□□ -1.34
CD44-230ENST00000528922 FHAD1B1AJZ9 1412 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 RRBP1Q9P2E9 1410 aaKnown RBP6.67□□□□□ -1.34
CD44-230ENST00000528922 IFT140Q96RY7 1462 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 FOXP2O15409 715 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 ENO2P09104 434 aaPredicted RBP6.67□□□□□ -1.34
CD44-230ENST00000528922 CANXP27824 592 aaKnown RBP6.67□□□□□ -1.34
CD44-230ENST00000528922 AOAHP28039 575 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 SDHAP31040 664 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 ADCYAP1R1P41586 468 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 DLX2Q07687 328 aaPredicted RBP6.67□□□□□ -1.34
CD44-230ENST00000528922 STRN3Q13033 797 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 ZNF385BQ569K4 471 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 VASNQ6EMK4 673 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 DTX3Q8N9I9 347 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 ASB15Q8WXK1 588 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 ZSWIM3Q96MP5 696 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 GBP4Q96PP9 640 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 SPTLC3Q9NUV7 552 aa6.67□□□□□ -1.34
CD44-230ENST00000528922 CFTRP13569 1480 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 URB2Q14146 1524 aaKnown RBP6.66□□□□□ -1.34
CD44-230ENST00000528922 CLASP1Q7Z460 1538 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 NEMP1O14524 444 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 TGM5O43548 720 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 FKBP9O95302 570 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 BPIP17213 487 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 PTX3P26022 381 aaPredicted RBP6.66□□□□□ -1.34
CD44-230ENST00000528922 CNGA1P29973 690 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 MC4RP32245 332 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 ID4P47928 161 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 ZNF174Q15697 407 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 SKIDA1Q1XH10 827 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 VWA3BQ502W6 1294 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 CT47A1Q5JQC4 288 aaPredicted RBP6.66□□□□□ -1.34
CD44-230ENST00000528922 FKBP9P1Q75LS8 142 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 TTLL6Q8N841 843 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 ZNF526Q8TF50 670 aaPredicted RBP6.66□□□□□ -1.34
CD44-230ENST00000528922 TMEM209Q96SK2 561 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 IRF2BPLQ9H1B7 796 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 ACSS2Q9NR19 701 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 SPO11Q9Y5K1 396 aa6.66□□□□□ -1.34
CD44-230ENST00000528922 ANKRD62A6NC57 917 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 RFXAPO00287 272 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 FFAR3O14843 346 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 EYA4O95677 639 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 MPIG6BO95866 241 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 IL18BPO95998 194 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 GLRBP48167 497 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 KPNA1P52294 538 aaPredicted RBP6.65□□□□□ -1.35
CD44-230ENST00000528922 IL2P60568 153 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 NFKB2Q00653 900 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 SART3Q15020 963 aaKnown RBP6.65□□□□□ -1.35
CD44-230ENST00000528922 SAPCD2Q86UD0 394 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 ADGRG2Q8IZP9 1017 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 EFHBQ8N7U6 833 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 IGDCC4Q8TDY8 1250 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 USP7Q93009 1102 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 FOXRED1Q96CU9 486 aaPredicted RBP6.65□□□□□ -1.35
CD44-230ENST00000528922 PCIF1Q9H4Z3 704 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 DLL4Q9NR61 685 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 UCKL1Q9NWZ5 548 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 ARHGAP28Q9P2N2 729 aa6.65□□□□□ -1.35
CD44-230ENST00000528922 A0A1B0GTL3 188 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 PRAMEF22A3QJZ6 481 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 GOLGA6L22H0YM25 854 aa6.64□□□□□ -1.35
CD44-230ENST00000528922 NUAK1O60285 661 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms