RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 SP9P0CG40 484 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 HOXD8P13378 290 aaPredicted RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 GLB1P16278 677 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 ADRA1BP35368 520 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 ST13P50502 369 aaKnown RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 PPATQ06203 517 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 TYRO3Q06418 890 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 RBL2Q08999 1139 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 MOGSQ13724 837 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 RASA3Q14644 834 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 HIF1AQ16665 826 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 PDE12Q6L8Q7 609 aaKnown RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 ZNF790Q6PG37 636 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 VPS37DQ86XT2 251 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 JARID2Q92833 1246 aaPredicted RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 BORCS6Q96GS4 357 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 RPGRIP1Q96KN7 1286 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 MXD3Q9BW11 206 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 SCNM1Q9BWG6 230 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 MRPL18Q9H0U6 180 aaKnown RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 ADAMTS1Q9UHI8 967 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 TBX21Q9UL17 535 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 FNDC3AQ9Y2H6 1198 aaKnown RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 GPC6Q9Y625 555 aaPredicted RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 MRVI1Q9Y6F6 885 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 MRPL42Q9Y6G3 142 aaKnown RBP4.3□□□□□ -1.72
CPNE3-204ENST00000517862 COL6A6A6NMZ7 2263 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 KIAA1217Q5T5P2 1943 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 MYO7AQ13402 2215 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 LRBAP50851 2863 aa4.3□□□□□ -1.72
CPNE3-204ENST00000517862 COL4A1P02462 1669 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 SVILO95425 2214 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 KIF28PB7ZC32 967 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 GIPC1O14908 333 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 TOP3BO95985 862 aaKnown RBP4.29□□□□□ -1.72
CPNE3-204ENST00000517862 ARP10275 920 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 AOC1P19801 751 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 LTBRP36941 435 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 NASPP49321 788 aaPredicted RBP4.29□□□□□ -1.72
CPNE3-204ENST00000517862 TBC1D8BQ0IIM8 1120 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 SPEM2Q0P670 501 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 TROAPQ12815 778 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 SERINC3Q13530 473 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 DLGAP5Q15398 846 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 CCL14Q16627 93 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 C1orf141Q5JVX7 400 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 XKR5Q6UX68 686 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 KRT25Q7Z3Z0 450 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 RAB44Q7Z6P3 723 aaPredicted RBP4.29□□□□□ -1.72
CPNE3-204ENST00000517862 RPAINQ86UA6 219 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 GALNT12Q8IXK2 581 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 TMEM130Q8N3G9 435 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 FAM181AQ8N9Y4 354 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 C3orf58Q8NDZ4 430 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 SHKBP1Q8TBC3 707 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 RELTQ969Z4 430 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 ZBED3Q96IU2 234 aaPredicted RBP4.29□□□□□ -1.72
CPNE3-204ENST00000517862 SPON2Q9BUD6 331 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 EHD4Q9H223 541 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 ZNF768Q9H5H4 540 aaKnown RBP4.29□□□□□ -1.72
CPNE3-204ENST00000517862 BRD7Q9NPI1 651 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 ABI2Q9NYB9 513 aaPredicted RBP4.29□□□□□ -1.72
CPNE3-204ENST00000517862 WASF3Q9UPY6 502 aa4.29□□□□□ -1.72
CPNE3-204ENST00000517862 FBN1P35555 2871 aaKnown RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 NBPF19A0A087WUL8 3843 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 SIP14410 1827 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 FLNCQ14315 2725 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 CAPN8A6NHC0 703 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 F8W735 103 aaPredicted RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 MYO1BO43795 1136 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 KCNK5O95279 499 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 SSBP05455 408 aaKnown RBP eCLIP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 ACPPP15309 386 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 CES1P23141 567 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 GSTT1P30711 240 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 GBP2P32456 591 aaPredicted RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 MMP14P50281 582 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 CSRP3P50461 194 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 GPSM2P81274 684 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 FAM160A1Q05DH4 1040 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 DLX2Q07687 328 aaPredicted RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 SFSWAPQ12872 951 aaKnown RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 GRAPQ13588 217 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 TCEAL1Q15170 157 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 FAM110CQ1W6H9 321 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 TIGD5Q53EQ6 642 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 PLEKHO1Q53GL0 409 aaPredicted RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 TCEAL5Q5H9L2 206 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 ANO1Q5XXA6 986 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 CWF19L1Q69YN2 538 aaKnown RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 DDX46Q7L014 1031 aaKnown RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 ANKRD33Q7Z3H0 272 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 HDGFL2Q7Z4V5 671 aaPredicted RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 KIAA0825Q8IV33 1275 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 UBALD2Q8IYN6 164 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 TBC1D16Q8TBP0 767 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 GRAPLQ8TC17 118 aaPredicted RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 MAP4K1Q92918 833 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 GPATCH3Q96I76 525 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 WRNIP1Q96S55 665 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms