RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MEFVO15553 781 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 H2AFZP0C0S5 128 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 IL1R1P14778 569 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 GCFC2P16383 781 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 ABCB4P21439 1286 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 HOXD13P35453 343 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 TCP10Q12799 353 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 GIT2Q14161 759 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 KNOP1Q1ED39 458 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 USH1GQ495M9 461 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 H2AFVQ71UI9 128 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 DAAM2Q86T65 1068 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 NLRP14Q86W24 1093 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 MYCBPAPQ8TBZ2 947 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 IPO4Q8TEX9 1081 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 SCFD2Q8WU76 684 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 BHMT2Q9H2M3 363 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 FBXL5Q9UKA1 691 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 DNM3Q9UQ16 869 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 ROBO1Q9Y6N7 1651 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 LAMB1P07942 1786 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 GCOM1H8Y6P7 765 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 TTI1O43156 1089 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 MYZAPP0CAP1 466 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 COPB2P35606 906 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 HSPA9P38646 679 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 SLC12A3P55017 1021 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 IKQ13123 557 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 ARHGAP27Q6ZUM4 889 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 MREGQ8N565 214 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 NR2E1Q9Y466 385 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 PGRMC1O00264 195 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 GCNT3O95395 438 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 NFIAQ12857 509 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 ITGB3BPQ13352 177 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 ZFPM1Q8IX07 1006 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 TPCN2Q8NHX9 752 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 C8orf37Q96NL8 207 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 OSGEPQ9NPF4 335 aa10.11□□□□□ -0.79
LIMCH1-215ENST00000512632 POLD1P28340 1107 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 ECHS1P30084 290 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 SHMT1P34896 483 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 MARSP56192 900 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 DOK7Q18PE1 504 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 EDRF1Q3B7T1 1238 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 KSR1Q8IVT5 923 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 CYP2W1Q8TAV3 490 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 NGLY1Q96IV0 654 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 TMBIM4Q9HC24 238 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 RGL1Q9NZL6 768 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 TMEM59LQ9UK28 342 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 NOVA2Q9UNW9 492 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 GAKO14976 1311 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 A6NNZ2 444 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 HMGB1P1B2RPK0 211 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 DDX3XO00571 662 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 ATP2C2O75185 946 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 FLOT1O75955 427 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 ARHGAP4P98171 946 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 TUBB8Q3ZCM7 444 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 HYIQ5T013 277 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 GPATCH4Q5T3I0 446 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 LRRC57Q8N9N7 239 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 SEPT11Q9NVA2 429 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 CCDC88AQ3V6T2 1871 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 IGKV6D-41A0A0C4DH26 115 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 DPY19L2P1Q6NXN4 242 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 KCNV1Q6PIU1 500 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 CD302Q8IX05 232 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 PIGOQ8TEQ8 1089 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 TBC1D22AQ8WUA7 517 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 PBKQ96KB5 322 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 GCNT4Q9P109 453 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 BCS1LQ9Y276 419 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 RREB1Q92766 1687 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 DCDC2CA8MYV0 355 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 NR3C1P04150 777 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 GUCY2CP25092 1073 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 ZNF844Q08AG5 666 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 FOXR2Q6PJQ5 311 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 GLYCTKQ8IVS8 523 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 CERS5Q8N5B7 392 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 LRRC4CQ9HCJ2 640 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 KCNMB3Q9NPA1 279 aa10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 ATF5Q9Y2D1 282 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-215ENST00000512632 HOXA13P31271 388 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 GALCP54803 685 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 IFI16Q16666 785 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 LRRC45Q96CN5 670 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 TRIM51Q9BSJ1 452 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 PLCB1Q9NQ66 1216 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 LAMB2P55268 1798 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 SPATA31C1P0DKV0 1188 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 IBSPP21815 317 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 DHX9Q08211 1270 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 ZNF211Q13398 564 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 SF3B2Q13435 895 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 KRT71Q3SY84 523 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms