RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 KLRC1P26715 233 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 ZNF76P36508 570 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 GATMP50440 423 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 RCAN1P53805 252 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 TMEM266Q2M3C6 531 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 SWSAP1Q6NVH7 229 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 POTEBQ6S5H4 581 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 MTHFD1LQ6UB35 978 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 TRMT1LQ7Z2T5 733 aaKnown RBP12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 KIAA0319LQ8IZA0 1049 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 TMEM40Q8WWA1 233 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 ZNF689Q96CS4 500 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 AIFM3Q96NN9 605 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 YME1L1Q96TA2 773 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 ZSWIM6Q9HCJ5 1215 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 LMCD1Q9NZU5 365 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 VPS54Q9P1Q0 977 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 TRPC6Q9Y210 931 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 TRANK1O15050 2925 aa12.73□□□□□ -0.37
LIMCH1-214ENST00000512228 NID2Q14112 1375 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 KIAA1671Q9BY89 1806 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 ESYT2A0FGR8 921 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 RRN3P2A6NIE6 340 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 H3BNC9 293 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 MGEA5O60502 916 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 FGD1P98174 961 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 AP3B2Q13367 1082 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 GPM6BQ13491 265 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 CAMK1Q14012 370 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 RUFY3Q7L099 469 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 NIPA1Q7RTP0 329 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 APBB2Q92870 758 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 IL17RAQ96F46 866 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 SLC26A6Q9BXS9 759 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 CELF4Q9BZC1 486 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 TSPYL2Q9H2G4 693 aaPredicted RBP12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 EPHX3Q9H6B9 360 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 PADI3Q9ULW8 664 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 RALGAPA2Q2PPJ7 1873 aa12.72□□□□□ -0.37
LIMCH1-214ENST00000512228 hCG_1984214I3L0E3 225 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 IPO5O00410 1097 aaKnown RBP12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 GRM6O15303 877 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 DGKIO75912 1065 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 NPY5RQ15761 445 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 PRR16Q569H4 304 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 TSHZ1Q6ZSZ6 1077 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 ZNF713Q8N859 430 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 PPP1R16BQ96T49 567 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 AZI2Q9H6S1 392 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 ZNF302Q9NR11 478 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 COG5Q9UP83 839 aa12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 NOC2LQ9Y3T9 749 aaKnown RBP12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 MAFBQ9Y5Q3 323 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-214ENST00000512228 IGSF9BQ9UPX0 1349 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 CCDC196A0A1B0GTZ2 297 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 SMIM35A0A1B0GVV1 85 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 IFNAR1P17181 557 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 DNAJB1P25685 340 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 CIITAP33076 1130 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 GTF2F1P35269 517 aaKnown RBP eCLIP12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 BMPR1AP36894 532 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 TCEAL5Q5H9L2 206 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 IER5Q5VY09 327 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 PDXDC2PQ6P474 469 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 ATP8B4Q8TF62 1192 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 MRPL38Q96DV4 380 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 ZNF577Q9BSK1 485 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 UPF3BQ9BZI7 483 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 UBE2ZQ9H832 354 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 C6orf50Q9HD87 102 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 GJB4Q9NTQ9 266 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 TRPV2Q9Y5S1 764 aa12.7□□□□□ -0.38
LIMCH1-214ENST00000512228 M0R2N6 131 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 BACH1O14867 736 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 MSH4O15457 936 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 ZNF862O60290 1169 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 HBP1O60381 514 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 IL9P15248 144 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 KCNA5P22460 613 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 LTBRP36941 435 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 KRT76Q01546 638 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 DLX2Q07687 328 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 UGCGQ16739 394 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 RSPH3Q86UC2 560 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 TEX2Q8IWB9 1127 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 REXO1Q8N1G1 1221 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 FIBCD1Q8N539 461 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 RNF26Q9BY78 433 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 ERVK-5Q9HDB9 667 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 ALG13Q9NP73 1137 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 HCSTQ9UBK5 93 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 GINS2Q9Y248 185 aa12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 MRPL42Q9Y6G3 142 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 FNDC1Q4ZHG4 1894 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-214ENST00000512228 KDM3AQ9Y4C1 1321 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 PLXNA4Q9HCM2 1894 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 NCOR1O75376 2440 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 C5orf67F2Z3F1 127 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 H3BQ06 376 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms