RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GNAT2P19087 354 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 FKBP4Q02790 459 aaKnown RBP eCLIP3.84□□□□□ -1.8
USP53-205ENST00000509769 NR5A1Q13285 461 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 GSTA3Q16772 222 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 EPC2Q52LR7 807 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 MDH1BQ5I0G3 518 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 IRGCQ6NXR0 463 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 TMEM110Q86TL2 294 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 ZNF354CQ86Y25 554 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 UNC45BQ8IWX7 931 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 RBM12BQ8IXT5 1001 aaKnown RBP3.84□□□□□ -1.8
USP53-205ENST00000509769 TTC5Q8N0Z6 440 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 MAGEC3Q8TD91 643 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 CPLX3Q8WVH0 158 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 CUL5Q93034 780 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 CCDC127Q96BQ5 260 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 COG3Q96JB2 828 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 KCNK16Q96T55 309 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 ING2Q9H160 280 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 CNNM2Q9H8M5 875 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 PDE11AQ9HCR9 933 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 ST7Q9NRC1 585 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 ING3Q9NXR8 418 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 TMOD4Q9NZQ9 345 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.84□□□□□ -1.8
USP53-205ENST00000509769 ZNF212Q9UDV6 495 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 SERPINA10Q9UK55 444 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 AMFRQ9UKV5 643 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 ATF5Q9Y2D1 282 aaPredicted RBP3.84□□□□□ -1.8
USP53-205ENST00000509769 R3HDM2Q9Y2K5 976 aaKnown RBP3.84□□□□□ -1.8
USP53-205ENST00000509769 MAGEB16A2A368 324 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 METTL21EPA6NDL7 271 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 NBNO60934 754 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 MYCP01106 439 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 P4HBP07237 508 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 EEF2P13639 858 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 KCNA3P22001 575 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 EEF1B2P24534 225 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 EEF1GP26641 437 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 KRT20P35900 424 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 TGFBR2P37173 567 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 MTTPP55157 894 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 RIPK4P57078 832 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 TNFAIP2Q03169 654 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 STX5Q13190 355 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SPARCL1Q14515 664 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ITIH4Q14624 930 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 INPP5AQ14642 412 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ASIC2Q16515 512 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 MMEL1Q495T6 779 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CNNM4Q6P4Q7 775 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 DSTYKQ6XUX3 929 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 KIAA0408Q6ZU52 694 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ZNF589Q86UQ0 364 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 IQUBQ8NA54 791 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 MIGA1Q8NAN2 632 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ZKSCAN3Q9BRR0 538 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CINPQ9BW66 212 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 TEX13BQ9BXU2 312 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 GOLPH3LQ9H4A5 285 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ZSWIM4Q9H7M6 989 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PLGRKTQ9HBL7 147 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 C8orf4Q9NR00 106 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 OLFML3Q9NRN5 406 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ORC3Q9UBD5 711 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 GPN3Q9UHW5 284 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 PODXLO00592 558 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 GAS2O43903 313 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 SURF6O75683 361 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 CPA3P15088 417 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 IL10P22301 178 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 GCLCP48506 637 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 TUFMP49411 452 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 BCAP31P51572 246 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ITGA1P56199 1179 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 NLRP11P59045 1033 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 MRPS9P82933 396 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 XIAPP98170 497 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 KCNA1Q09470 495 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SUZ12Q15022 739 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 ARHGEF16Q5VV41 709 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 CRELD2Q6UXH1 353 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 PLD3Q8IV08 490 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SPICE1Q8N0Z3 855 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 IGSF22Q8N9C0 903 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SCAIQ8N9R8 606 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PDPRQ8NCN5 879 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SYMPKQ92797 1274 aaKnown RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 PPP2R3CQ969Q6 453 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 SGSM3Q96HU1 749 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 PANX2Q96RD6 677 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 C1orf50Q9BV19 199 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ASCC2Q9H1I8 757 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 PARVGQ9HBI0 331 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 IFNKQ9P0W0 207 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 STOX2Q9P2F5 926 aaPredicted RBP3.83□□□□□ -1.8
USP53-205ENST00000509769 SEL1LQ9UBV2 794 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 ADAM21Q9UKJ8 722 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 TK2O00142 265 aa3.83□□□□□ -1.8
USP53-205ENST00000509769 GNGT2O14610 69 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms