RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 RFC4P35249 363 aa13□□□□□ -0.33
UBE3D-206ENST00000505226 USP17L24Q0WX57 530 aa13□□□□□ -0.33
UBE3D-206ENST00000505226 CUL1Q13616 776 aa13□□□□□ -0.33
UBE3D-206ENST00000505226 USP17L6PQ6QN14 398 aa13□□□□□ -0.33
UBE3D-206ENST00000505226 PBKQ96KB5 322 aa13□□□□□ -0.33
UBE3D-206ENST00000505226 BUD13Q9BRD0 619 aaKnown RBP eCLIP13□□□□□ -0.33
UBE3D-206ENST00000505226 PNMA6FA0A0J9YX94 578 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 USP17L10C9JJH3 530 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 hCG_1984214I3L0E3 225 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 SLFN11Q7Z7L1 901 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 ZNF713Q8N859 430 aaPredicted RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 GPATCH11Q8N954 259 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 EIF1ADQ8N9N8 165 aaKnown RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 UBLCP1Q8WVY7 318 aaPredicted RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 JPH2Q9BR39 696 aaPredicted RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 CD209Q9NNX6 404 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 PGRMC1O00264 195 aaKnown RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 KRIT1O00522 736 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 DDX3XO00571 662 aaKnown RBP eCLIP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 AKAP3O75969 853 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 EPS15P42566 896 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 CASP4P49662 377 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 GPSM2P81274 684 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 DPP8Q6V1X1 898 aaPredicted RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 TMC3Q7Z5M5 1100 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 P2RX7Q99572 595 aaKnown RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 BMP2KQ9NSY1 1161 aaPredicted RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 NOVA2Q9UNW9 492 aaKnown RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
UBE3D-206ENST00000505226 LEMD3Q9Y2U8 911 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 COL24A1Q17RW2 1714 aa12.99□□□□□ -0.33
UBE3D-206ENST00000505226 IGKV6D-41A0A0C4DH26 115 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 TMCO5BA8MYB1 307 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 MEIS1O00470 390 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 CETN3O15182 167 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 MARCH6O60337 910 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 POLD1P28340 1107 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 POU5F1Q01860 360 aaKnown RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 DDR1Q08345 913 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 ZNF543Q08ER8 600 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 KCNA1Q09470 495 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 ASPRV1Q53RT3 343 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 MICALCLQ6ZW33 695 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 NT5DC3Q86UY8 548 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 RAPGEF5Q92565 580 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 SPAG5Q96R06 1193 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 GOLGA6L10A6NI86 522 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 COPB2P35606 906 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 EPHA7Q15375 998 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 EDRF1Q3B7T1 1238 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 KCTD1Q719H9 257 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 ZNF804AQ7Z570 1209 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 RASGEF1CQ8N431 466 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 MDM1Q8TC05 714 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 OSGEPQ9NPF4 335 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 GGA2Q9UJY4 613 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 CNTNAP4Q9C0A0 1308 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 TULP1O00294 542 aaPredicted RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 SMTNP53814 917 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 JAM2P57087 298 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 MAGOHP61326 146 aaKnown RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 GABPAQ06546 454 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 PICALMQ13492 652 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 GRAPQ13588 217 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 GIT2Q14161 759 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 EXOC3L4Q17RC7 722 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 DCAF12L1Q5VU92 463 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 GRAPLQ8TC17 118 aaPredicted RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 ZKSCAN4Q969J2 545 aaPredicted RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 MAGOHBQ96A72 148 aaKnown RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 CALR3Q96L12 384 aaKnown RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 TRIM51Q9BSJ1 452 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 NT5C3AQ9H0P0 336 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 DPH5Q9H2P9 285 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 DHX36Q9H2U1 1008 aaKnown RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 PSTPIP2Q9H939 334 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 SLC40A1Q9NP59 571 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 KLC4Q9NSK0 619 aa12.98□□□□□ -0.33
UBE3D-206ENST00000505226 ARMCX3Q9UH62 379 aaPredicted RBP12.98□□□□□ -0.33
UBE3D-206ENST00000505226 SRRM3A6NNA2 597 aaPredicted RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 PHF20L1A8MW92 1017 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 RSPH10B2B2RC85 870 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 RSPH10BP0C881 870 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 HOXA7P31268 230 aaPredicted RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 PRKCIP41743 596 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 DCAF17Q5H9S7 520 aaPredicted RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 PEX26Q7Z412 305 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 CATSPER3Q86XQ3 398 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 ATP8B4Q8TF62 1192 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 SEC14L1Q92503 715 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 CUL5Q93034 780 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 MYCBPQ99417 103 aaPredicted RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 KCNMB3Q9NPA1 279 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 THRAP3Q9Y2W1 955 aaKnown RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 RTCBQ9Y3I0 505 aaKnown RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 GNPATO15228 680 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 AFPP02771 609 aaKnown RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 PPP2R2AP63151 447 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 SPIRE1Q08AE8 756 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms