RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 NPHP3-ACAD11A0A0J9YXS1 232 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 CLRN2A0PK11 232 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 MACROD2A1Z1Q3 448 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 GTPBP10A4D1E9 387 aaKnown RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 EPHB6O15197 1021 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 SEC31AO94979 1220 aaKnown RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 CAP2P40123 477 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 ECE1P42892 770 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 USP14P54578 494 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 JAG1P78504 1218 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 CYP27A1Q02318 531 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 KCNH2Q12809 1159 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 RRP1BQ14684 758 aaKnown RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 TNIP1Q15025 636 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 TERF2Q15554 542 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 ASIC2Q16515 512 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 ASTE1Q2TB18 679 aaPredicted RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 CEP55Q53EZ4 464 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 OTOP1Q7RTM1 612 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 ZNF572Q7Z3I7 529 aaPredicted RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 SMC1BQ8NDV3 1235 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 GOLGA5Q8TBA6 731 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 SMCR8Q8TEV9 937 aaPredicted RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 NACC1Q96RE7 527 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 FUT8Q9BYC5 575 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 VEZTQ9HBM0 779 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 JADE2Q9NQC1 790 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 AIPL1Q9NZN9 384 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 RNF14Q9UBS8 474 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 FBXL5Q9UKA1 691 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 ODF2LQ9ULJ1 636 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 ZNRF3Q9ULT6 936 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 HYOU1Q9Y4L1 999 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 RCCD1A6NED2 376 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 ENC1O14682 589 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 MAP2K7O14733 419 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 ZNF263O14978 683 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 PSMD10O75832 226 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 POLR2FP61218 127 aaKnown RBP13.16□□□□□ -0.3
NUP54-202ENST00000502850 CACNB1Q02641 598 aaPredicted RBP13.16□□□□□ -0.3
NUP54-202ENST00000502850 BEND6Q5SZJ8 279 aaPredicted RBP13.16□□□□□ -0.3
NUP54-202ENST00000502850 HGSNATQ68CP4 663 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 NIPA1Q7RTP0 329 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 MCF2L2Q86YR7 1114 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 ACER1Q8TDN7 264 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 HSD17B14Q9BPX1 270 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 MKNK1Q9BUB5 465 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 TEKT3Q9BXF9 490 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 FGFBP2Q9BYJ0 223 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 UBXN6Q9BZV1 441 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 EPC1Q9H2F5 836 aa13.16□□□□□ -0.3
NUP54-202ENST00000502850 MAP3K20Q9NYL2 800 aaKnown RBP13.16□□□□□ -0.3
NUP54-202ENST00000502850 CEP350Q5VT06 3117 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 MEIS1O00470 390 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 NKRFO15226 690 aaKnown RBP eCLIP13.15□□□□□ -0.3
NUP54-202ENST00000502850 RAD17O75943 681 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 DDNO94850 711 aaPredicted RBP13.15□□□□□ -0.3
NUP54-202ENST00000502850 GCNT3O95395 438 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 NR3C1P04150 777 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 PLEKP08567 350 aaPredicted RBP13.15□□□□□ -0.3
NUP54-202ENST00000502850 RHOXF2BP0C7M4 288 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 BCRP11274 1271 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 PSMC6P62333 389 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 MAP3K10Q02779 954 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 CYP4A11Q02928 519 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 RAD51AP2Q09MP3 1159 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 TNFAIP1Q13829 316 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 RAPGEF1Q13905 1077 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 SMC1AQ14683 1233 aaKnown RBP13.15□□□□□ -0.3
NUP54-202ENST00000502850 EPHA7Q15375 998 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 SLC18A3Q16572 532 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 IFI16Q16666 785 aaKnown RBP13.15□□□□□ -0.3
NUP54-202ENST00000502850 RINT1Q6NUQ1 792 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 CCDC174Q6PII3 467 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 ZNF771Q7L3S4 317 aaPredicted RBP13.15□□□□□ -0.3
NUP54-202ENST00000502850 VPS36Q86VN1 386 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 LPAR1Q92633 364 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 PNKPQ96T60 521 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 RIT2Q99578 217 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 RHOXF2Q9BQY4 288 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 GANQ9H2C0 597 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 PARVGQ9HBI0 331 aa13.15□□□□□ -0.3
NUP54-202ENST00000502850 ZNF277Q9NRM2 450 aaPredicted RBP13.15□□□□□ -0.3
NUP54-202ENST00000502850 SHTN1A0MZ66 631 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 BTNL10A8MVZ5 291 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 WDR46O15213 610 aaKnown RBP13.14□□□□□ -0.31
NUP54-202ENST00000502850 NOL4O94818 638 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 ICAM1P05362 532 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 PAFAH1B1P43034 410 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 KLHL30Q0D2K2 578 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 ALCAMQ13740 583 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 EXOC3L4Q17RC7 722 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 GBP6Q6ZN66 633 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 HS2ST1Q7LGA3 356 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 ZNF577Q9BSK1 485 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 WDR18Q9BV38 432 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 RUSC1Q9BVN2 902 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 VIPAS39Q9H9C1 493 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 NLRC4Q9NPP4 1024 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 HDAC6Q9UBN7 1215 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms