RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TLR9Q9NR96 1032 aa6.5□□□□□ -1.37
VPS50-219ENST00000495039 ST7Q9NRC1 585 aa6.5□□□□□ -1.37
VPS50-219ENST00000495039 RIC8BQ9NVN3 520 aa6.5□□□□□ -1.37
VPS50-219ENST00000495039 SRPK3Q9UPE1 567 aa6.5□□□□□ -1.37
VPS50-219ENST00000495039 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.49□□□□□ -1.37
VPS50-219ENST00000495039 U2SURPO15042 1029 aaKnown RBP6.49□□□□□ -1.37
VPS50-219ENST00000495039 MAKP20794 623 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 TGM1P22735 817 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 PTGS1P23219 599 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 HIBADHP31937 336 aaKnown RBP6.49□□□□□ -1.37
VPS50-219ENST00000495039 MSX2P35548 267 aaPredicted RBP6.49□□□□□ -1.37
VPS50-219ENST00000495039 IL13RA1P78552 427 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 HHEXQ03014 270 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 FOXL1Q12952 345 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 TBR1Q16650 682 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 DDR2Q16832 855 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 ZNF483Q8TF39 744 aaPredicted RBP6.49□□□□□ -1.37
VPS50-219ENST00000495039 CFHR4Q92496 578 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 KIAA1683Q9H0B3 1180 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 PLA2G3Q9NZ20 509 aa6.49□□□□□ -1.37
VPS50-219ENST00000495039 TRAV20A0A0B4J274 112 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 TCRBV5S4A2TA0A5A2 114 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 BLACEA4D250 179 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 FAM90A27PA6NNH2 459 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 FGRP09769 529 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 GJA4P35212 333 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 ADCY8P40145 1251 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 NANOS3P60323 173 aaKnown RBP6.48□□□□□ -1.37
VPS50-219ENST00000495039 LDLRAD3Q86YD5 345 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 CELF2-AS1Q8N7Q2 184 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 NELFAQ9H3P2 528 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 ZNF703Q9H7S9 590 aaPredicted RBP6.48□□□□□ -1.37
VPS50-219ENST00000495039 MMRN2Q9H8L6 949 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 INCENPQ9NQS7 918 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 ATP23Q9Y6H3 246 aa6.48□□□□□ -1.37
VPS50-219ENST00000495039 PPFIA2O75334 1257 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 ERCC5P28715 1186 aaPredicted RBP6.47□□□□□ -1.37
VPS50-219ENST00000495039 PAK1Q13153 545 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 GPR19Q15760 415 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 FNDC7Q5VTL7 733 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 ARHGAP36Q6ZRI8 547 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 EP400NLQ6ZTU2 488 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 LARP4Q71RC2 724 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS50-219ENST00000495039 OTOP2Q7RTS6 562 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 HNRNPLLQ8WVV9 542 aaKnown RBP6.47□□□□□ -1.37
VPS50-219ENST00000495039 OR10A2Q9H208 303 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 GALNT8Q9NY28 637 aa6.47□□□□□ -1.37
VPS50-219ENST00000495039 MEOX1P50221 254 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 EIF4HQ15056 248 aaKnown RBP6.46□□□□□ -1.38
VPS50-219ENST00000495039 STILQ15468 1287 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 FIGNQ5HY92 759 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 ASXL2Q76L83 1435 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 ADGRE4PQ86SQ3 457 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 SGMS1Q86VZ5 419 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 DNAJC10Q8IXB1 793 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 LRRC47Q8N1G4 583 aaKnown RBP6.46□□□□□ -1.38
VPS50-219ENST00000495039 ST13P5Q8NFI4 369 aaPredicted RBP6.46□□□□□ -1.38
VPS50-219ENST00000495039 LARP4BQ92615 738 aaKnown RBP6.46□□□□□ -1.38
VPS50-219ENST00000495039 WNK4Q96J92 1243 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 GIT1Q9Y2X7 761 aa6.46□□□□□ -1.38
VPS50-219ENST00000495039 AQP7O14520 342 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 CYP27B1O15528 508 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 AOAHP28039 575 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 GRM7Q14831 915 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 PCOLCEQ15113 449 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 TRIM68Q6AZZ1 485 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 MRGPRGQ86SM5 289 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 RTKN2Q8IZC4 609 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 WDR48Q8TAF3 677 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 BTBD2Q9BX70 525 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 CDC42EP3Q9UKI2 254 aa6.45□□□□□ -1.38
VPS50-219ENST00000495039 UNCXA6NJT0 531 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 MAN2B1O00754 1011 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 WNT9AO14904 365 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 MRE11P49959 708 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 HERVK_113P62684 666 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 ARID5AQ03989 594 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 KRTAP15-1Q3LI76 137 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 YOD1Q5VVQ6 348 aaPredicted RBP6.44□□□□□ -1.38
VPS50-219ENST00000495039 FILIP1Q7Z7B0 1213 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 MTDHQ86UE4 582 aaKnown RBP6.44□□□□□ -1.38
VPS50-219ENST00000495039 MCF2L2Q86YR7 1114 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 D2HGDHQ8N465 521 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 FBXW5Q969U6 566 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 ZG16BQ96DA0 208 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 CATSPERZQ9NTU4 200 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 PARPBPQ9NWS1 579 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 TRAF6Q9Y4K3 522 aa6.44□□□□□ -1.38
VPS50-219ENST00000495039 A0A0G2JNJ9 132 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 PRAMEF25A6NGN4 478 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 CAPN14A8MX76 684 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 PDE6AP16499 860 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 MC4RP32245 332 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 ANKS3Q6ZW76 656 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 MAMDC2Q7Z304 686 aaPredicted RBP6.43□□□□□ -1.38
VPS50-219ENST00000495039 PTRH1Q86Y79 214 aaKnown RBP6.43□□□□□ -1.38
VPS50-219ENST00000495039 GPR135Q8IZ08 494 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 THEMISQ8N1K5 641 aaPredicted RBP6.43□□□□□ -1.38
VPS50-219ENST00000495039 OR14K1Q8NGZ2 314 aa6.43□□□□□ -1.38
VPS50-219ENST00000495039 CRAMP1Q96RY5 1269 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms