RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	PDIA3	P30101	505 aa	Known RBP	13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	CD52	P31358	61 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	STAT5B	P51692	787 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	CCT2	P78371	535 aa	Known RBP	13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	EPC2	Q52LR7	807 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	ABHD15	Q6UXT9	468 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	WDFY4	Q6ZS81	3184 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	NIPA1	Q7RTP0	329 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	PLA2G4D	Q86XP0	818 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	TEX2	Q8IWB9	1127 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	REXO1	Q8N1G1	1221 aa	Known RBP	13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	FBXO22	Q8NEZ5	403 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	APBB2	Q92870	758 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	YME1L1	Q96TA2	773 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	AZI2	Q9H6S1	392 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	VPS54	Q9P1Q0	977 aa		13.26	□□□□□ -0.29
VTI1A-208	ENST00000494728	ARID2	Q68CP9	1835 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	IPO5	O00410	1097 aa	Known RBP	13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	DTNB	O60941	627 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	CYP3A4	P08684	503 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	EVC	P57679	992 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	TSHZ1	Q6ZSZ6	1077 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	PLPPR4	Q7Z2D5	763 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	SLC26A6	Q9BXS9	759 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	UPF3B	Q9BZI7	483 aa	Known RBP	13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	ZSWIM6	Q9HCJ5	1215 aa		13.25	□□□□□ -0.29
VTI1A-208	ENST00000494728	ADGRA3	Q8IWK6	1321 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	IGSF9B	Q9UPX0	1349 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	CCDC196	A0A1B0GTZ2	297 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	POTEB3	A0JP26	581 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	RRN3P2	A6NIE6	340 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	ENPP3	O14638	875 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	REC8	O95072	547 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	IFNAR1	P17181	557 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	ZNF76	P36508	570 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	TMEM266	Q2M3C6	531 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	POTEB	Q6S5H4	581 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	MTHFD1L	Q6UB35	978 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	RUFY3	Q7L099	469 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	TMEM192	Q8IY95	271 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	CRIPAK	Q8N1N5	446 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	TMEM40	Q8WWA1	233 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	HLA-C	Q95604	372 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	GJA10	Q969M2	543 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	AIFM3	Q96NN9	605 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	RNF26	Q9BY78	433 aa	Predicted RBP	13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	GLT8D2	Q9H1C3	349 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	TMX1	Q9H3N1	280 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	C6orf50	Q9HD87	102 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	LMCD1	Q9NZU5	365 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	PCDHA2	Q9Y5H9	948 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	TRPV2	Q9Y5S1	764 aa		13.24	□□□□□ -0.29
VTI1A-208	ENST00000494728	SMIM35	A0A1B0GVV1	85 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728		H3BNC9	293 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	BACH1	O14867	736 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	GATM	P50440	423 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	NPY5R	Q15761	445 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	PRR16	Q569H4	304 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	RSPH3	Q86UC2	560 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	ATP8B4	Q8TF62	1192 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	ZNF689	Q96CS4	500 aa	Predicted RBP	13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	PPP1R16B	Q96T49	567 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	ZNF577	Q9BSK1	485 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	CDHR5	Q9HBB8	845 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	ZNF302	Q9NR11	478 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	PADI3	Q9ULW8	664 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	COG5	Q9UP83	839 aa		13.23	□□□□□ -0.29
VTI1A-208	ENST00000494728	KDM3A	Q9Y4C1	1321 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	MGEA5	O60502	916 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	C22orf31	O95567	290 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	PSMA5	P28066	241 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	CIITA	P33076	1130 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	CTNNB1	P35222	781 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	SET	Q01105	290 aa	Predicted RBP	13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	GPM6B	Q13491	265 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	UGCG	Q16739	394 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	SWSAP1	Q6NVH7	229 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	PDXDC2P	Q6P474	469 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	KIAA0319L	Q8IZA0	1049 aa		13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	MRPL38	Q96DV4	380 aa	Known RBP	13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	CELF4	Q9BZC1	486 aa	Known RBP	13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	UBE2Z	Q9H832	354 aa	Predicted RBP	13.22	□□□□□ -0.29
VTI1A-208	ENST00000494728	COL1A2	P08123	1366 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	GRM6	O15303	877 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	MSH4	O15457	936 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	ZNF862	O60290	1169 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	DGKI	O75912	1065 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	CSPG5	O95196	566 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	KLRC1	P26715	233 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	GNA11	P29992	359 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	SLC26A2	P50443	739 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	KRT76	Q01546	638 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	STK3	Q13188	491 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	IER5	Q5VY09	327 aa		13.21	□□□□□ -0.29
VTI1A-208	ENST00000494728	MIS18BP1	Q6P0N0	1132 aa		13.21	□□□□□ -0.29

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