RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CTSWP56202 376 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 LACTBP83111 547 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 RNASELQ05823 741 aaKnown RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PGM2Q96G03 612 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.73□□□□□ -0.372e-6■□□□□ 9.1
HDAC4-210ENST00000493582 PCDHA6Q9UN73 950 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PCDHA8Q9Y5H6 950 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 TCP11X1B4DZS4 312 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 DDAH1O94760 285 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 PPP1R2P41236 205 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 PDE6CP51160 858 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 PMS2P54278 862 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 MXRA7P84157 204 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 AMPD3Q01432 767 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 DENND2CQ68D51 928 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 EPS8L3Q8TE67 593 aaKnown RBP12.72□□□□□ -0.37
HDAC4-210ENST00000493582 SEC14L1Q92503 715 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 BORCS6Q96GS4 357 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 NSRP1Q9H0G5 558 aaKnown RBP12.72□□□□□ -0.37
HDAC4-210ENST00000493582 PABPC3Q9H361 631 aaKnown RBP12.72□□□□□ -0.37
HDAC4-210ENST00000493582 CUEDC2Q9H467 287 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 SLITRK6Q9H5Y7 841 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 TIAM2Q8IVF5 1701 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 CCDC169A6NNP5 214 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 FGGP02679 453 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 FERP16591 822 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 PCK1P35558 622 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 ZNF131P52739 623 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 PRPF4BQ13523 1007 aaKnown RBP12.72□□□□□ -0.37
HDAC4-210ENST00000493582 NEK9Q8TD19 979 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 DYDC1Q8WWB3 177 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 SYN2Q92777 582 aaPredicted RBP12.72□□□□□ -0.37
HDAC4-210ENST00000493582 SYT15Q9BQS2 421 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 SEMA4AQ9H3S1 761 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 MTMR7Q9Y216 660 aa12.72□□□□□ -0.37
HDAC4-210ENST00000493582 GOLGA6L10A0A0M3HER8 536 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 A0A1B0GVG6 124 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 TRAF5O00463 557 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 FGFR1OPO95684 399 aaKnown RBP12.71□□□□□ -0.37
HDAC4-210ENST00000493582 FGFR2P21802 821 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 LETM2Q2VYF4 491 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 NUCKS1Q9H1E3 243 aaKnown RBP12.71□□□□□ -0.37
HDAC4-210ENST00000493582 ANAPC4Q9UJX5 808 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 SNX24Q9Y343 169 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 RBM5P52756 815 aaKnown RBP eCLIP12.71□□□□□ -0.371e-6■■■□□ 17.2
HDAC4-210ENST00000493582 DYNLL1P63167 89 aaKnown RBP12.71□□□□□ -0.37
HDAC4-210ENST00000493582 POU5F1Q01860 360 aaKnown RBP12.71□□□□□ -0.37
HDAC4-210ENST00000493582 SEPT2Q15019 361 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 CNGA2Q16280 664 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 ASIC2Q16515 512 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 SLC5A9Q2M3M2 681 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 NUGGCQ68CJ6 796 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 ZNF571Q7Z3V5 609 aaPredicted RBP12.71□□□□□ -0.37
HDAC4-210ENST00000493582 CNBD1Q8NA66 436 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 TPCN2Q8NHX9 752 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 FBXO25Q8TCJ0 367 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 TEKT4Q8WW24 435 aa12.71□□□□□ -0.37
HDAC4-210ENST00000493582 MMTAG2Q9BU76 263 aaKnown RBP12.71□□□□□ -0.37
HDAC4-210ENST00000493582 LRRD1A4D1F6 860 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 IRS4O14654 1257 aaPredicted RBP12.71□□□□□ -0.38
HDAC4-210ENST00000493582 CCNT1O60563 726 aaKnown RBP12.71□□□□□ -0.38
HDAC4-210ENST00000493582 HIP1RO75146 1068 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 NUDT17P0C025 328 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 CCNG1P51959 295 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 TRIM28Q13263 835 aaKnown RBP12.71□□□□□ -0.38
HDAC4-210ENST00000493582 PLS1Q14651 629 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 TBC1D25Q3MII6 688 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 PPP1R15BQ5SWA1 713 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 SOGA3Q5TF21 947 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 GIGYF2Q6Y7W6 1299 aaKnown RBP12.71□□□□□ -0.38
HDAC4-210ENST00000493582 SV2BQ7L1I2 683 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 ASRGL1Q7L266 308 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 OTUD6AQ7L8S5 288 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 GUF1Q8N442 669 aaKnown RBP12.71□□□□□ -0.38
HDAC4-210ENST00000493582 ITFG2Q969R8 447 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 IFT74Q96LB3 600 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 ZDHHC18Q9NUE0 388 aa12.71□□□□□ -0.38
HDAC4-210ENST00000493582 MAGEB6P1A0A0J9YX57 407 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 FOXO6A8MYZ6 492 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 SUN1O94901 812 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 OAS1P00973 400 aaKnown RBP12.7□□□□□ -0.38
HDAC4-210ENST00000493582 ACTN1P12814 892 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 SLC5A1P13866 664 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 CREB1P16220 341 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 ROR2Q01974 943 aaKnown RBP12.7□□□□□ -0.38
HDAC4-210ENST00000493582 SLC4A8Q2Y0W8 1093 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 MFN1Q8IWA4 741 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 RMDN2Q96LZ7 410 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 MAGEF1Q9HAY2 307 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 C2CD2Q9Y426 696 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 NUP188Q5SRE5 1749 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 USP17L12C9JPN9 530 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 USP17L21D6R901 530 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 M0R2N6 131 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 PYGLP06737 847 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 LRRC63Q05C16 580 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 ALKBH5Q6P6C2 394 aaKnown RBP12.7□□□□□ -0.38
HDAC4-210ENST00000493582 UTP4Q969X6 686 aaKnown RBP12.7□□□□□ -0.38
HDAC4-210ENST00000493582 CCDC134Q9H6E4 229 aa12.7□□□□□ -0.38
HDAC4-210ENST00000493582 ETNK1Q9HBU6 452 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms