RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 BARHL2Q9NY43 387 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 V9GY48 417 aaPredicted RBP7.75□□□□□ -1.17
VPS52-219ENST00000493379 FRMPD4Q14CM0 1322 aa7.75□□□□□ -1.17
VPS52-219ENST00000493379 SMCHD1A6NHR9 2005 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 COL11A1P12107 1806 aaPredicted RBP7.74□□□□□ -1.17
VPS52-219ENST00000493379 M0R2N6 131 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 SEPT4O43236 478 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 MSCO60682 206 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 CD2BP2O95400 341 aaKnown RBP7.74□□□□□ -1.17
VPS52-219ENST00000493379 GRM5P41594 1212 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 FGD1P98174 961 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 SCRN1Q12765 414 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 ME3Q16798 604 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 WDR78Q5VTH9 848 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 KRT40Q6A162 431 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 TAPT1Q6NXT6 567 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 GJD3Q8N144 294 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 CMTR1Q8N1G2 835 aaKnown RBP7.74□□□□□ -1.17
VPS52-219ENST00000493379 ZSCAN31Q96LW9 406 aaPredicted RBP7.74□□□□□ -1.17
VPS52-219ENST00000493379 ZMYND12Q9H0C1 365 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 GLT8D2Q9H1C3 349 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 IGSF5Q9NSI5 407 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 ADD3Q9UEY8 706 aaKnown RBP7.74□□□□□ -1.17
VPS52-219ENST00000493379 LIMCH1Q9UPQ0 1083 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 Q9Y3F1 56 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 VPS13AQ96RL7 3174 aa7.74□□□□□ -1.17
VPS52-219ENST00000493379 SOWAHDA6NJG2 315 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 B4DLN1 442 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 STXBP3O00186 592 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 DHX16O60231 1041 aaKnown RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 ZIC2O95409 532 aaPredicted RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 CTDNEP1O95476 244 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 SCG2P13521 617 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 CCND3P30281 292 aaPredicted RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 CYP2C19P33261 490 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 ALDH5A1P51649 535 aaPredicted RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 MRPL12P52815 198 aaKnown RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 ST3GAL1Q11201 340 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 ACVR2BQ13705 512 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 ARID5BQ14865 1188 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 ST3GAL2Q16842 350 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 WWC2Q6AWC2 1192 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 IQSEC1Q6DN90 963 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 XRRA1Q6P2D8 792 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 NSMFQ6X4W1 530 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 ARMCX2Q7L311 632 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 VSIG10LQ86VR7 867 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 CCDC144CPQ8IYA2 1237 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 TSEN2Q8NCE0 465 aaKnown RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 NSUN6Q8TEA1 469 aaKnown RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 CRYGNQ8WXF5 182 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 TAAR1Q96RJ0 339 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 HINFPQ9BQA5 517 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 NKX2-4Q9H2Z4 354 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 PSTPIP2Q9H939 334 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 UPF2Q9HAU5 1272 aaKnown RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 RIC8AQ9NPQ8 531 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 PDLIM7Q9NR12 457 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 HOMER2Q9NSB8 354 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 COL20A1Q9P218 1284 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 SEC63Q9UGP8 760 aaKnown RBP7.73□□□□□ -1.17
VPS52-219ENST00000493379 STK36Q9NRP7 1315 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 TECTAO75443 2155 aa7.73□□□□□ -1.17
VPS52-219ENST00000493379 ZNFX1Q9P2E3 1918 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 BAZ2BQ9UIF8 2168 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 PTPDC1A2A3K4 754 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 GCOM1H8Y6P7 765 aaPredicted RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 RFXAPO00287 272 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 LGR5O75473 907 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 EIF3JO75822 258 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 STAM2O75886 525 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 FOSP01100 380 aaPredicted RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 POLR2MP0CAP2 368 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 ALADP13716 330 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 FDPSP14324 419 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 TAL1P17542 331 aaPredicted RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 FSHRP23945 695 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 MCM2P49736 904 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 NPY5RQ15761 445 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 USH1GQ495M9 461 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 MCTP2Q6DN12 878 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 CCSAPQ6IQ19 270 aaPredicted RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 CCDC62Q6P9F0 684 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 SLC30A10Q6XR72 485 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 LIAT1Q6ZQX7 453 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 HOMER1Q86YM7 354 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 RAB11FIP4Q86YS3 637 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS52-219ENST00000493379 SMARCC2Q8TAQ2 1214 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 GTF3C6Q969F1 213 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 PURBQ96QR8 312 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 PDCD2LQ9BRP1 358 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 LLPHQ9BRT6 129 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 SLKQ9H2G2 1235 aaPredicted RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 NCOA5Q9HCD5 579 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 CWC22Q9HCG8 908 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 VTA1Q9NP79 307 aa7.72□□□□□ -1.17
VPS52-219ENST00000493379 SH2B1Q9NRF2 756 aaPredicted RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 DDX20Q9UHI6 824 aaKnown RBP7.72□□□□□ -1.17
VPS52-219ENST00000493379 ISY1Q9ULR0 285 aaKnown RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms