RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 NANOS3P60323 173 aaKnown RBP6.84□□□□□ -1.31
SCN1A-206ENST00000491429 IL13RA1P78552 427 aa6.84□□□□□ -1.31
SCN1A-206ENST00000491429 YOD1Q5VVQ6 348 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-206ENST00000491429 LDLRAD3Q86YD5 345 aa6.84□□□□□ -1.31
SCN1A-206ENST00000491429 HNRNPLLQ8WVV9 542 aaKnown RBP6.84□□□□□ -1.31
SCN1A-206ENST00000491429 SGSM3Q96HU1 749 aa6.84□□□□□ -1.31
SCN1A-206ENST00000491429 TLR9Q9NR96 1032 aa6.84□□□□□ -1.31
SCN1A-206ENST00000491429 RIC8BQ9NVN3 520 aa6.84□□□□□ -1.31
SCN1A-206ENST00000491429 FGRP09769 529 aa6.83□□□□□ -1.32
SCN1A-206ENST00000491429 RPS19P39019 145 aaKnown RBP6.83□□□□□ -1.32
SCN1A-206ENST00000491429 TUBA3CQ13748 450 aa6.83□□□□□ -1.32
SCN1A-206ENST00000491429 KRTAP15-1Q3LI76 137 aa6.83□□□□□ -1.32
SCN1A-206ENST00000491429 TUBA3EQ6PEY2 450 aa6.83□□□□□ -1.32
SCN1A-206ENST00000491429 NSMFQ6X4W1 530 aa6.83□□□□□ -1.32
SCN1A-206ENST00000491429 LARP4BQ92615 738 aaKnown RBP6.83□□□□□ -1.32
SCN1A-206ENST00000491429 PUF60Q9UHX1 559 aaKnown RBP6.83□□□□□ -1.32
SCN1A-206ENST00000491429 SRPK3Q9UPE1 567 aa6.83□□□□□ -1.32
SCN1A-206ENST00000491429 PDE6AP16499 860 aa6.82□□□□□ -1.32
SCN1A-206ENST00000491429 HIBADHP31937 336 aaKnown RBP6.82□□□□□ -1.32
SCN1A-206ENST00000491429 ALG1Q9BT22 464 aa6.82□□□□□ -1.32
SCN1A-206ENST00000491429 PLA2G3Q9NZ20 509 aa6.82□□□□□ -1.32
SCN1A-206ENST00000491429 CDC42EP3Q9UKI2 254 aa6.82□□□□□ -1.32
SCN1A-206ENST00000491429 TRAF6Q9Y4K3 522 aa6.82□□□□□ -1.32
SCN1A-206ENST00000491429 ADH4P08319 380 aa6.81□□□□□ -1.32
SCN1A-206ENST00000491429 MC4RP32245 332 aa6.81□□□□□ -1.32
SCN1A-206ENST00000491429 IFRD2Q12894 506 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-206ENST00000491429 DDR2Q16832 855 aa6.81□□□□□ -1.32
SCN1A-206ENST00000491429 ARHGAP36Q6ZRI8 547 aa6.81□□□□□ -1.32
SCN1A-206ENST00000491429 GPR135Q8IZ08 494 aa6.81□□□□□ -1.32
SCN1A-206ENST00000491429 ZNF483Q8TF39 744 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-206ENST00000491429 INCENPQ9NQS7 918 aa6.81□□□□□ -1.32
SCN1A-206ENST00000491429 MAN2B1O00754 1011 aa6.8□□□□□ -1.32
SCN1A-206ENST00000491429 PTGS1P23219 599 aa6.8□□□□□ -1.32
SCN1A-206ENST00000491429 PCOLCEQ15113 449 aa6.8□□□□□ -1.32
SCN1A-206ENST00000491429 USP30Q70CQ3 517 aa6.8□□□□□ -1.32
SCN1A-206ENST00000491429 ZNF627Q7L945 461 aa6.8□□□□□ -1.32
SCN1A-206ENST00000491429 NLGN4XQ8N0W4 816 aa6.8□□□□□ -1.32
SCN1A-206ENST00000491429 CEP72Q9P209 647 aa6.8□□□□□ -1.32
SCN1A-206ENST00000491429 HECAQ9UBI9 543 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-206ENST00000491429 IQCA1LA6NCM1 817 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 AMY2AP04746 511 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 AMY2BP19961 511 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 ERCC5P28715 1186 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-206ENST00000491429 EIF4HQ15056 248 aaKnown RBP6.79□□□□□ -1.32
SCN1A-206ENST00000491429 GPR19Q15760 415 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 FILIP1Q7Z7B0 1213 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 PTRH1Q86Y79 214 aaKnown RBP6.79□□□□□ -1.32
SCN1A-206ENST00000491429 ZNF703Q9H7S9 590 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-206ENST00000491429 GALNT8Q9NY28 637 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 BTBD7Q9P203 1132 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 FBXO10Q9UK96 956 aa6.79□□□□□ -1.32
SCN1A-206ENST00000491429 R3HCC1Q9Y3T6 440 aaKnown RBP6.79□□□□□ -1.32
SCN1A-206ENST00000491429 TRAV20A0A0B4J274 112 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 AOAHP28039 575 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 MRE11P49959 708 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 GRM7Q14831 915 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 STILQ15468 1287 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 TRIM68Q6AZZ1 485 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 PCSK4Q6UW60 755 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 CXXC5Q7LFL8 322 aaKnown RBP6.78□□□□□ -1.32
SCN1A-206ENST00000491429 SGMS1Q86VZ5 419 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 OSTM1Q86WC4 334 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 MCF2L2Q86YR7 1114 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 DNAJC10Q8IXB1 793 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 OR14K1Q8NGZ2 314 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 WNK4Q96J92 1243 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 AGAP2Q99490 1192 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 ATP23Q9Y6H3 246 aa6.78□□□□□ -1.32
SCN1A-206ENST00000491429 C4BPAP04003 597 aaKnown RBP6.77□□□□□ -1.33
SCN1A-206ENST00000491429 KRT15P19012 456 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 MAKP20794 623 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 DNAJA1P31689 397 aaKnown RBP6.77□□□□□ -1.33
SCN1A-206ENST00000491429 CD83Q01151 205 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 PAK1Q13153 545 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 LRSAM1Q6UWE0 723 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 ANKS3Q6ZW76 656 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 OTOP2Q7RTS6 562 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 CLIP3Q96DZ5 547 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 TMEM176AQ96HP8 235 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 OR10A2Q9H208 303 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 CATSPERZQ9NTU4 200 aa6.77□□□□□ -1.33
SCN1A-206ENST00000491429 PRAMEF25A6NGN4 478 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 MPIG6BO95866 241 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 PYGMP11217 842 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 HGFACQ04756 655 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 FIGNQ5HY92 759 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 SPTY2D1Q68D10 685 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-206ENST00000491429 MRGPRGQ86SM5 289 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 D2HGDHQ8N465 521 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 ZG16BQ96DA0 208 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 AMNQ9BXJ7 453 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 NELFAQ9H3P2 528 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 AGO3Q9H9G7 860 aaKnown RBP6.76□□□□□ -1.33
SCN1A-206ENST00000491429 MSL2Q9HCI7 577 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 SLC2A4RGQ9NR83 387 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 AURKAIP1Q9NWT8 199 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-206ENST00000491429 CBLCQ9ULV8 474 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 REXO2Q9Y3B8 237 aaKnown RBP6.76□□□□□ -1.33
SCN1A-206ENST00000491429 DMRT1Q9Y5R6 373 aa6.76□□□□□ -1.33
SCN1A-206ENST00000491429 CAPN14A8MX76 684 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms