RNA–Protein interactions for RNA: ENST00000490447.6

YIPF3-208, Transcript of Yip1 domain family member 3, humanhuman

TSL 2

Gene YIPF3, Length 1,321 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-208ENST00000490447 ZNF689Q96CS4 500 aaPredicted RBP20.27■□□□□ 0.83
YIPF3-208ENST00000490447 PLVAPQ9BX97 442 aa20.27■□□□□ 0.83
YIPF3-208ENST00000490447 BRPF3Q9ULD4 1205 aa20.27■□□□□ 0.83
YIPF3-208ENST00000490447 PCDHA2Q9Y5H9 948 aa20.27■□□□□ 0.83
YIPF3-208ENST00000490447 NLRC5Q86WI3 1866 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 SMIM35A0A1B0GVV1 85 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 GRM6O15303 877 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 DGKIO75912 1065 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 CSPG5O95196 566 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 STAG3L1P0CL83 205 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 SREBF1P36956 1147 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 EXOSC10Q01780 885 aaKnown RBP20.26■□□□□ 0.83
YIPF3-208ENST00000490447 ITGB3BPQ13352 177 aaPredicted RBP20.26■□□□□ 0.83
YIPF3-208ENST00000490447 FAM160B1Q5W0V3 765 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 NPAS4Q8IUM7 802 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 NME8Q8N427 588 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 PADI3Q9ULW8 664 aa20.26■□□□□ 0.83
YIPF3-208ENST00000490447 IGSF9BQ9UPX0 1349 aa20.25■□□□□ 0.83
YIPF3-208ENST00000490447 DDX39AO00148 427 aaKnown RBP20.25■□□□□ 0.83
YIPF3-208ENST00000490447 HMGB1P09429 215 aaKnown RBP20.25■□□□□ 0.83
YIPF3-208ENST00000490447 LINC00271P0C7V0 271 aa20.25■□□□□ 0.83
YIPF3-208ENST00000490447 ALADP13716 330 aa20.25■□□□□ 0.83
YIPF3-208ENST00000490447 MTHFD1LQ6UB35 978 aa20.25■□□□□ 0.83
YIPF3-208ENST00000490447 CMTR2Q8IYT2 770 aaKnown RBP20.25■□□□□ 0.83
YIPF3-208ENST00000490447 LINC01599Q8WXQ3 324 aa20.25■□□□□ 0.83
YIPF3-208ENST00000490447 PPP2R3CQ969Q6 453 aa20.25■□□□□ 0.83
YIPF3-208ENST00000490447 CELF4Q9BZC1 486 aaKnown RBP20.25■□□□□ 0.83
YIPF3-208ENST00000490447 TMEM260Q9NX78 707 aa20.25■□□□□ 0.83
YIPF3-208ENST00000490447 MEIS1O00470 390 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 MMP1P03956 469 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 SCG2P13521 617 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 RCAN1P53805 252 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 KRT76Q01546 638 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 FUT2Q10981 343 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 COL19A1Q14993 1142 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 NIPA1Q7RTP0 329 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 PRKAG3Q9UGI9 489 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 TCEAL9Q9UHQ7 104 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 LRFN2Q9ULH4 789 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 GINS2Q9Y248 185 aa20.24■□□□□ 0.83
YIPF3-208ENST00000490447 CCDC196A0A1B0GTZ2 297 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 HBP1O60381 514 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 ATG7O95352 703 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 IBSPP21815 317 aaPredicted RBP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 CLK2P49760 499 aaKnown RBP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 METAP2P50579 478 aaKnown RBP eCLIP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 ADCK5Q3MIX3 580 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 TSGA10IPQ3SY00 556 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 PAN2Q504Q3 1202 aaKnown RBP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 NAALADL2Q58DX5 795 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 MIS18BP1Q6P0N0 1132 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 CENPQQ7L2Z9 268 aaPredicted RBP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 PLA2G4DQ86XP0 818 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 P2RX5Q93086 422 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 ALG13Q9NP73 1137 aaKnown RBP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 C11orf16Q9NQ32 467 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 ZNF302Q9NR11 478 aa20.23■□□□□ 0.83
YIPF3-208ENST00000490447 ARIH1Q9Y4X5 557 aaPredicted RBP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 MRPL42Q9Y6G3 142 aaKnown RBP20.23■□□□□ 0.83
YIPF3-208ENST00000490447 KDM3AQ9Y4C1 1321 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 CDC45O75419 566 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 KLRC1P26715 233 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 CDC27P30260 824 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 HYAL1Q12794 435 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 NFX1Q12986 1120 aaKnown RBP20.22■□□□□ 0.83
YIPF3-208ENST00000490447 CSPP1Q1MSJ5 1256 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 ODR4Q5SWX8 454 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 JAKMIP3Q5VZ66 844 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 PDXDC2PQ6P474 469 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 RASEFQ8IZ41 740 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 ATP8B4Q8TF62 1192 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 CCDC12Q8WUD4 166 aaPredicted RBP20.22■□□□□ 0.83
YIPF3-208ENST00000490447 IGFLR1Q9H665 355 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 RNF216Q9NWF9 866 aaPredicted RBP20.22■□□□□ 0.83
YIPF3-208ENST00000490447 PLAGL2Q9UPG8 496 aa20.22■□□□□ 0.83
YIPF3-208ENST00000490447 COL1A2P08123 1366 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 IGKV6D-21A0A0A0MT36 114 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 PRR33A8MZF0 331 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 RPS6KA5O75582 802 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 CCNE2O96020 404 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 SETQ01105 290 aaPredicted RBP20.21■□□□□ 0.83
YIPF3-208ENST00000490447 CLUL1Q15846 466 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 PFKFB3Q16875 520 aaPredicted RBP20.21■□□□□ 0.83
YIPF3-208ENST00000490447 TMEM266Q2M3C6 531 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 MCTP2Q6DN12 878 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 ABHD15Q6UXT9 468 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 RTN4RL1Q86UN2 441 aaPredicted RBP20.21■□□□□ 0.83
YIPF3-208ENST00000490447 CCDC60Q8IWA6 550 aaPredicted RBP20.21■□□□□ 0.83
YIPF3-208ENST00000490447 CKAP2LQ8IYA6 745 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 C6orf50Q9HD87 102 aa20.21■□□□□ 0.83
YIPF3-208ENST00000490447 TTC3P53804 2025 aa20.2■□□□□ 0.82
YIPF3-208ENST00000490447 DENND3A2RUS2 1198 aa20.2■□□□□ 0.82
YIPF3-208ENST00000490447 FAM86B1E9PN63 330 aa20.2■□□□□ 0.82
YIPF3-208ENST00000490447 IPO5O00410 1097 aaKnown RBP20.2■□□□□ 0.82
YIPF3-208ENST00000490447 FAM86B2P0C5J1 330 aa20.2■□□□□ 0.82
YIPF3-208ENST00000490447 ADD1P35611 737 aaKnown RBP20.2■□□□□ 0.82
YIPF3-208ENST00000490447 ZP2Q05996 745 aa20.2■□□□□ 0.82
YIPF3-208ENST00000490447 CTC1Q2NKJ3 1217 aa20.2■□□□□ 0.82
YIPF3-208ENST00000490447 ZNF484Q5JVG2 852 aa20.2■□□□□ 0.82
YIPF3-208ENST00000490447 SWSAP1Q6NVH7 229 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms