RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 PDXDC2PQ6P474 469 aa28.31■■■□□ 2.12
HMGN1-217ENST00000489072 RSPH3Q86UC2 560 aa28.31■■■□□ 2.12
HMGN1-217ENST00000489072 ATP8B4Q8TF62 1192 aa28.31■■■□□ 2.12
HMGN1-217ENST00000489072 TNPO1Q92973 898 aaKnown RBP28.31■■■□□ 2.12
HMGN1-217ENST00000489072 GAS2L1Q99501 681 aaPredicted RBP28.31■■■□□ 2.12
HMGN1-217ENST00000489072 FAM49AQ9H0Q0 323 aaPredicted RBP28.31■■■□□ 2.12
HMGN1-217ENST00000489072 ORC3Q9UBD5 711 aaPredicted RBP28.31■■■□□ 2.12
HMGN1-217ENST00000489072 GJB5O95377 273 aa28.3■■■□□ 2.12
HMGN1-217ENST00000489072 FDPSP14324 419 aaKnown RBP28.3■■■□□ 2.12
HMGN1-217ENST00000489072 TAP1Q03518 808 aa28.3■■■□□ 2.12
HMGN1-217ENST00000489072 SMAP1Q8IYB5 467 aaPredicted RBP28.3■■■□□ 2.12
HMGN1-217ENST00000489072 SLC5A5Q92911 643 aa28.3■■■□□ 2.12
HMGN1-217ENST00000489072 GJA10Q969M2 543 aa28.3■■■□□ 2.12
HMGN1-217ENST00000489072 PCDHA2Q9Y5H9 948 aa28.3■■■□□ 2.12
HMGN1-217ENST00000489072 CYP3A7-CYP3A51PA0A087WV96 503 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 HBP1O60381 514 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 GHRP10912 638 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 CYP3A7P24462 503 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 NONOQ15233 471 aaKnown RBP eCLIP28.29■■■□□ 2.12
HMGN1-217ENST00000489072 Q4G0T1 1027 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 FAM117BQ6P1L5 589 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 MTHFD1LQ6UB35 978 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 KRT25Q7Z3Z0 450 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 SPRED2Q7Z698 418 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 ZBED2Q9BTP6 218 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 CERS4Q9HA82 394 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 PCDHA10Q9Y5I2 948 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 MAFBQ9Y5Q3 323 aaPredicted RBP28.29■■■□□ 2.12
HMGN1-217ENST00000489072 CDY2AQ9Y6F7 541 aa28.29■■■□□ 2.12
HMGN1-217ENST00000489072 ZBTB42B2RXF5 422 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 PSAPP07602 524 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 MRPS6P82932 125 aaKnown RBP28.28■■■□□ 2.12
HMGN1-217ENST00000489072 LPIN1Q14693 890 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 INF2Q27J81 1249 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 USP38Q8NB14 1042 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 OXER1Q8TDS5 423 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 MBOAT7Q96N66 472 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 RIT2Q99578 217 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 IFIH1Q9BYX4 1025 aaKnown RBP28.28■■■□□ 2.12
HMGN1-217ENST00000489072 TCEAL9Q9UHQ7 104 aa28.28■■■□□ 2.12
HMGN1-217ENST00000489072 REV3LO60673 3130 aa28.27■■■□□ 2.12
HMGN1-217ENST00000489072 LOC101059915A0A1B0GWI6 518 aaPredicted RBP28.27■■■□□ 2.12
HMGN1-217ENST00000489072 EPOPA6NHQ4 379 aa28.27■■■□□ 2.12
HMGN1-217ENST00000489072 AMHP03971 560 aa28.27■■■□□ 2.12
HMGN1-217ENST00000489072 ST3GAL1Q11201 340 aa28.27■■■□□ 2.12
HMGN1-217ENST00000489072 NSUN7Q8NE18 718 aaKnown RBP28.27■■■□□ 2.12
HMGN1-217ENST00000489072 RAD9AQ99638 391 aa28.27■■■□□ 2.12
HMGN1-217ENST00000489072 GABBR1Q9UBS5 961 aa28.27■■■□□ 2.12
HMGN1-217ENST00000489072 COL1A2P08123 1366 aa28.26■■■□□ 2.12
HMGN1-217ENST00000489072 IGSF9BQ9UPX0 1349 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 SMIM35A0A1B0GVV1 85 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 WDR64B1ANS9 1081 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 RFXAPO00287 272 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 GAS7O60861 476 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 XBP1P17861 261 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 KLRC1P26715 233 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 TMEM62Q0P6H9 643 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 FBXO47Q5MNV8 452 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 LRCH2Q5VUJ6 765 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 MOXD1Q6UVY6 613 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 MYOCDQ8IZQ8 938 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 APBB2Q92870 758 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 UNC45AQ9H3U1 944 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 SAMM50Q9Y512 469 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 CUL9Q8IWT3 2517 aa28.26■■■□□ 2.11
HMGN1-217ENST00000489072 PRRC2BQ5JSZ5 2229 aaKnown RBP28.25■■■□□ 2.11
HMGN1-217ENST00000489072 PSMD10O75832 226 aa28.25■■■□□ 2.11
HMGN1-217ENST00000489072 RPLP2P05387 115 aaKnown RBP28.25■■■□□ 2.11
HMGN1-217ENST00000489072 IGFBP4P22692 258 aa28.25■■■□□ 2.11
HMGN1-217ENST00000489072 ZNF484Q5JVG2 852 aa28.25■■■□□ 2.11
HMGN1-217ENST00000489072 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.25■■■□□ 2.11
HMGN1-217ENST00000489072 CKAP2LQ8IYA6 745 aa28.25■■■□□ 2.11
HMGN1-217ENST00000489072 WASF1Q92558 559 aa28.25■■■□□ 2.11
HMGN1-217ENST00000489072 TEKT3Q9BXF9 490 aa28.25■■■□□ 2.11
HMGN1-217ENST00000489072 DISC1Q9NRI5 854 aa28.25■■■□□ 2.11
HMGN1-217ENST00000489072 CCDC194A0A1B0GVG4 234 aa28.24■■■□□ 2.11
HMGN1-217ENST00000489072 CHMP2AO43633 222 aa28.24■■■□□ 2.11
HMGN1-217ENST00000489072 JAK2O60674 1132 aa28.24■■■□□ 2.11
HMGN1-217ENST00000489072 TRMT1LQ7Z2T5 733 aaKnown RBP28.24■■■□□ 2.11
HMGN1-217ENST00000489072 ETNPPLQ8TBG4 499 aa28.24■■■□□ 2.11
HMGN1-217ENST00000489072 BBXQ8WY36 941 aaPredicted RBP28.24■■■□□ 2.11
HMGN1-217ENST00000489072 AGO3Q9H9G7 860 aaKnown RBP28.24■■■□□ 2.11
HMGN1-217ENST00000489072 TRPV2Q9Y5S1 764 aa28.24■■■□□ 2.11
HMGN1-217ENST00000489072 SLC37A4O43826 429 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 ZNF862O60290 1169 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 UGCGQ16739 394 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 LETM2Q2VYF4 491 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 EARS2Q5JPH6 523 aaKnown RBP28.23■■■□□ 2.11
HMGN1-217ENST00000489072 IER5Q5VY09 327 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 TSHZ1Q6ZSZ6 1077 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 ARNTL2Q8WYA1 636 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 KIF2CQ99661 725 aa28.23■■■□□ 2.11
HMGN1-217ENST00000489072 DDX25Q9UHL0 483 aaKnown RBP28.23■■■□□ 2.11
HMGN1-217ENST00000489072 COL4A4P53420 1690 aaPredicted RBP28.23■■■□□ 2.11
HMGN1-217ENST00000489072 HTRA4P83105 476 aaPredicted RBP28.22■■■□□ 2.11
HMGN1-217ENST00000489072 B3GNT9Q6UX72 402 aa28.22■■■□□ 2.11
HMGN1-217ENST00000489072 PIK3AP1Q6ZUJ8 805 aa28.22■■■□□ 2.11
HMGN1-217ENST00000489072 KIAA0319LQ8IZA0 1049 aa28.22■■■□□ 2.11
HMGN1-217ENST00000489072 TOP1MTQ969P6 601 aa28.22■■■□□ 2.11
HMGN1-217ENST00000489072 LINC01553A4QN01 128 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms