RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 AGO4Q9HCK5 861 aaKnown RBP13.48□□□□□ -0.25
HDAC6-230ENST00000488543 PANK4Q9NVE7 773 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 FBXO40Q9UH90 709 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 PCDHA2Q9Y5H9 948 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 LOXHD1Q8IVV2 1947 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 A0A0U1RQJ8 604 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 SLITRK3O94933 977 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 SLC25A27O95847 323 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 COPB1P53618 953 aaKnown RBP13.48□□□□□ -0.25
HDAC6-230ENST00000488543 SPAG1Q07617 926 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 ITGB3BPQ13352 177 aaPredicted RBP13.48□□□□□ -0.25
HDAC6-230ENST00000488543 MTMR1Q13613 665 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 CTTNQ14247 550 aaKnown RBP13.48□□□□□ -0.25
HDAC6-230ENST00000488543 CENPPQ6IPU0 288 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 TRIM65Q6PJ69 517 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 TOGARAM2Q6ZUX3 1019 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 GUF1Q8N442 669 aaKnown RBP13.48□□□□□ -0.25
HDAC6-230ENST00000488543 ATRIPQ8WXE1 791 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 TRIM47Q96LD4 638 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 TEKT3Q9BXF9 490 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 CPA4Q9UI42 421 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 DNM3Q9UQ16 869 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 SLC45A1Q9Y2W3 748 aa13.48□□□□□ -0.25
HDAC6-230ENST00000488543 KIAA1217Q5T5P2 1943 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 TMEM88BA6NKF7 163 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 POTEB2H3BUK9 544 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 SORBS3O60504 671 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 URI1O94763 535 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-230ENST00000488543 EYA4O95677 639 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 SLC10A3P09131 477 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 CACNB1Q02641 598 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-230ENST00000488543 MTF1Q14872 753 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 CYP4F22Q6NT55 531 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 TMEM139Q8IV31 216 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 REXO1L1PQ8IX06 675 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 CTAGE1Q96RT6 745 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 SRRTQ9BXP5 876 aaKnown RBP13.47□□□□□ -0.25
HDAC6-230ENST00000488543 FGFBP2Q9BYJ0 223 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 TAB2Q9NYJ8 693 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.47□□□□□ -0.256e-6■■□□□ 13.3
HDAC6-230ENST00000488543 GIT2Q14161 759 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 EPHA7Q15375 998 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 ARHGAP29Q52LW3 1261 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 UTP14CQ5TAP6 766 aaKnown RBP13.47□□□□□ -0.25
HDAC6-230ENST00000488543 SPECC1LQ69YQ0 1117 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 EEPD1Q7L9B9 569 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 KCTD17Q8N5Z5 321 aa13.47□□□□□ -0.25
HDAC6-230ENST00000488543 NOC3LQ8WTT2 800 aaKnown RBP13.47□□□□□ -0.25
HDAC6-230ENST00000488543 BMP2KQ9NSY1 1161 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-230ENST00000488543 WRAP73Q9P2S5 460 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-230ENST00000488543 BICDL2A1A5D9 508 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 CCND2P30279 289 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 ALDH5A1P51649 535 aaPredicted RBP13.46□□□□□ -0.25
HDAC6-230ENST00000488543 LRRC41Q15345 812 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 FAM26FQ5R3K3 315 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 ZNF771Q7L3S4 317 aaPredicted RBP13.46□□□□□ -0.25
HDAC6-230ENST00000488543 CCDC65Q8IXS2 484 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 FAM133AQ8N9E0 248 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 ZNF784Q8NCA9 323 aaPredicted RBP13.46□□□□□ -0.25
HDAC6-230ENST00000488543 FGD4Q96M96 766 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 WDR24Q96S15 920 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 MMP19Q99542 508 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 RUSC1Q9BVN2 902 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 L2HGDHQ9H9P8 463 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 KCND1Q9NSA2 647 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 TELO2Q9Y4R8 837 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 PFASO15067 1338 aa13.46□□□□□ -0.25
HDAC6-230ENST00000488543 CEP350Q5VT06 3117 aa13.46□□□□□ -0.26
HDAC6-230ENST00000488543 WDR81Q562E7 1941 aa13.46□□□□□ -0.26
HDAC6-230ENST00000488543 ETF1P62495 437 aaKnown RBP13.46□□□□□ -0.26
HDAC6-230ENST00000488543 RAD51AP2Q09MP3 1159 aa13.46□□□□□ -0.26
HDAC6-230ENST00000488543 KCTD2Q14681 263 aa13.46□□□□□ -0.26
HDAC6-230ENST00000488543 CSGALNACT2Q8N6G5 542 aa13.46□□□□□ -0.26
HDAC6-230ENST00000488543 PARK7Q99497 189 aaKnown RBP13.46□□□□□ -0.26
HDAC6-230ENST00000488543 CARD6Q9BX69 1037 aa13.46□□□□□ -0.26
HDAC6-230ENST00000488543 BHMT2Q9H2M3 363 aa13.46□□□□□ -0.26
HDAC6-230ENST00000488543 MANSC4A6NHS7 340 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-230ENST00000488543 ZBTB39O15060 712 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 SEC31AO94979 1220 aaKnown RBP13.45□□□□□ -0.26
HDAC6-230ENST00000488543 MUTP22033 750 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 EEF1GP26641 437 aaKnown RBP13.45□□□□□ -0.26
HDAC6-230ENST00000488543 CLCN6P51797 869 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 FILIP1LQ4L180 1135 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 IFNL1Q8IU54 200 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 TPH2Q8IWU9 490 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 CPLX3Q8WVH0 158 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 REEP2Q9BRK0 252 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 IRX2Q9BZI1 471 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-230ENST00000488543 VPS16Q9H269 839 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 MROH8Q9H579 483 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 YY1P25490 414 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 GCLCP48506 637 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-230ENST00000488543 SP2Q02086 613 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 TAF1CQ15572 869 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-230ENST00000488543 XRRA1Q6P2D8 792 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 SEPT14Q6ZU15 432 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 DNERQ8NFT8 737 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 PIGOQ8TEQ8 1089 aa13.45□□□□□ -0.26
HDAC6-230ENST00000488543 INPP4AQ96PE3 977 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-230ENST00000488543 PPP2R2CQ9Y2T4 447 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms