RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ENPP3O14638 875 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 ADAMTS3O15072 1205 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 DHX15O43143 795 aaKnown RBP25.68■■□□□ 1.7
PTPN4-211ENST00000488279 PPFIA3O75145 1194 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 IFNAR1P17181 557 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 CCT2P78371 535 aaKnown RBP25.68■■□□□ 1.7
PTPN4-211ENST00000488279 SETQ01105 290 aaPredicted RBP25.68■■□□□ 1.7
PTPN4-211ENST00000488279 EPC2Q52LR7 807 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 MIS18BP1Q6P0N0 1132 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 NME8Q8N427 588 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 CCDC148Q8NFR7 591 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 TRAPPC12Q8WVT3 735 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 IL17RAQ96F46 866 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 TBC1D22BQ9NU19 505 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 CYP46A1Q9Y6A2 500 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 SQORQ9Y6N5 450 aa25.68■■□□□ 1.7
PTPN4-211ENST00000488279 HBP1O60381 514 aa25.67■■□□□ 1.7
PTPN4-211ENST00000488279 NEFLP07196 543 aa25.67■■□□□ 1.7
PTPN4-211ENST00000488279 MTHFD1LQ6UB35 978 aa25.67■■□□□ 1.7
PTPN4-211ENST00000488279 MICAL3Q7RTP6 2002 aa25.67■■□□□ 1.7
PTPN4-211ENST00000488279 NCOA5Q9HCD5 579 aaKnown RBP25.67■■□□□ 1.7
PTPN4-211ENST00000488279 ZNF302Q9NR11 478 aa25.67■■□□□ 1.7
PTPN4-211ENST00000488279 SMIM35A0A1B0GVV1 85 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 KCNQ1P51787 676 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 TMEM62Q0P6H9 643 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 SWSAP1Q6NVH7 229 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 PDXDC2PQ6P474 469 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 TMEM192Q8IY95 271 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 ATP8B4Q8TF62 1192 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 UIMC1Q96RL1 719 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 AGO3Q9H9G7 860 aaKnown RBP25.66■■□□□ 1.7
PTPN4-211ENST00000488279 TRPV2Q9Y5S1 764 aa25.66■■□□□ 1.7
PTPN4-211ENST00000488279 KLRC1P26715 233 aa25.65■■□□□ 1.7
PTPN4-211ENST00000488279 PTPROQ16827 1216 aa25.65■■□□□ 1.7
PTPN4-211ENST00000488279 PRR16Q569H4 304 aa25.65■■□□□ 1.7
PTPN4-211ENST00000488279 TRIM22Q8IYM9 498 aa25.65■■□□□ 1.7
PTPN4-211ENST00000488279 CELF4Q9BZC1 486 aaKnown RBP25.65■■□□□ 1.7
PTPN4-211ENST00000488279 SH3GLB2Q9NR46 395 aa25.65■■□□□ 1.7
PTPN4-211ENST00000488279 VPS54Q9P1Q0 977 aa25.65■■□□□ 1.7
PTPN4-211ENST00000488279 TCEAL9Q9UHQ7 104 aa25.65■■□□□ 1.7
PTPN4-211ENST00000488279 H3BNC9 293 aa25.64■■□□□ 1.7
PTPN4-211ENST00000488279 CD52P31358 61 aa25.64■■□□□ 1.7
PTPN4-211ENST00000488279 CIITAP33076 1130 aa25.64■■□□□ 1.7
PTPN4-211ENST00000488279 TOB2Q14106 344 aaPredicted RBP25.64■■□□□ 1.7
PTPN4-211ENST00000488279 ZNF746Q6NUN9 644 aaPredicted RBP25.64■■□□□ 1.7
PTPN4-211ENST00000488279 CCDC60Q8IWA6 550 aaPredicted RBP25.64■■□□□ 1.7
PTPN4-211ENST00000488279 FIBCD1Q8N539 461 aa25.64■■□□□ 1.7
PTPN4-211ENST00000488279 RASGRP4Q8TDF6 673 aa25.64■■□□□ 1.7
PTPN4-211ENST00000488279 MRPL38Q96DV4 380 aaKnown RBP25.64■■□□□ 1.7
PTPN4-211ENST00000488279 FTHL17Q9BXU8 183 aa25.64■■□□□ 1.7
PTPN4-211ENST00000488279 TM6SF1Q9BZW5 370 aa25.64■■□□□ 1.7
PTPN4-211ENST00000488279 NLRP5P59047 1200 aa25.63■■□□□ 1.69
PTPN4-211ENST00000488279 KRT76Q01546 638 aa25.63■■□□□ 1.69
PTPN4-211ENST00000488279 SSRP1Q08945 709 aaKnown RBP25.63■■□□□ 1.69
PTPN4-211ENST00000488279 GPM6BQ13491 265 aa25.63■■□□□ 1.69
PTPN4-211ENST00000488279 ZNF484Q5JVG2 852 aa25.63■■□□□ 1.69
PTPN4-211ENST00000488279 CKAP2LQ8IYA6 745 aa25.63■■□□□ 1.69
PTPN4-211ENST00000488279 SMAP1Q8IYB5 467 aaPredicted RBP25.63■■□□□ 1.69
PTPN4-211ENST00000488279 CPLX1O14810 134 aa25.62■■□□□ 1.69
PTPN4-211ENST00000488279 PSAPP07602 524 aa25.62■■□□□ 1.69
PTPN4-211ENST00000488279 ZNF274Q96GC6 653 aaPredicted RBP25.62■■□□□ 1.69
PTPN4-211ENST00000488279 PADI3Q9ULW8 664 aa25.62■■□□□ 1.69
PTPN4-211ENST00000488279 PCDHA10Q9Y5I2 948 aa25.62■■□□□ 1.69
PTPN4-211ENST00000488279 MAFBQ9Y5Q3 323 aaPredicted RBP25.62■■□□□ 1.69
PTPN4-211ENST00000488279 IGSF9BQ9UPX0 1349 aa25.62■■□□□ 1.69
PTPN4-211ENST00000488279 KDM3AQ9Y4C1 1321 aa25.62■■□□□ 1.69
PTPN4-211ENST00000488279 COL1A2P08123 1366 aa25.61■■□□□ 1.69
PTPN4-211ENST00000488279 USP11P51784 963 aa25.61■■□□□ 1.69
PTPN4-211ENST00000488279 PAK2Q13177 524 aa25.61■■□□□ 1.69
PTPN4-211ENST00000488279 SAMM50Q9Y512 469 aa25.61■■□□□ 1.69
PTPN4-211ENST00000488279 ATP4AP20648 1035 aa25.6■■□□□ 1.69
PTPN4-211ENST00000488279 RTN4RL1Q86UN2 441 aaPredicted RBP25.6■■□□□ 1.69
PTPN4-211ENST00000488279 KIAA0319LQ8IZA0 1049 aa25.6■■□□□ 1.69
PTPN4-211ENST00000488279 BBXQ8WY36 941 aaPredicted RBP25.6■■□□□ 1.69
PTPN4-211ENST00000488279 LENG9Q96B70 501 aa25.6■■□□□ 1.69
PTPN4-211ENST00000488279 NECAB3Q96P71 396 aaPredicted RBP25.6■■□□□ 1.69
PTPN4-211ENST00000488279 LARP6Q9BRS8 491 aaKnown RBP25.6■■□□□ 1.69
PTPN4-211ENST00000488279 UPF3BQ9BZI7 483 aaKnown RBP25.6■■□□□ 1.69
PTPN4-211ENST00000488279 RWDD3Q9Y3V2 267 aa25.6■■□□□ 1.69
PTPN4-211ENST00000488279 COL4A4P53420 1690 aaPredicted RBP25.59■■□□□ 1.69
PTPN4-211ENST00000488279 SIP14410 1827 aa25.59■■□□□ 1.69
PTPN4-211ENST00000488279 DEXIO95424 95 aa25.59■■□□□ 1.69
PTPN4-211ENST00000488279 RB1P06400 928 aa25.59■■□□□ 1.69
PTPN4-211ENST00000488279 BTG3Q14201 252 aaPredicted RBP25.59■■□□□ 1.69
PTPN4-211ENST00000488279 CPLX2Q6PUV4 134 aaKnown RBP25.59■■□□□ 1.69
PTPN4-211ENST00000488279 FAM43BQ6ZT52 329 aaPredicted RBP25.59■■□□□ 1.69
PTPN4-211ENST00000488279 LINC01599Q8WXQ3 324 aa25.59■■□□□ 1.69
PTPN4-211ENST00000488279 ZNF689Q96CS4 500 aaPredicted RBP25.59■■□□□ 1.69
PTPN4-211ENST00000488279 GINS2Q9Y248 185 aa25.59■■□□□ 1.69
PTPN4-211ENST00000488279 ADGRA3Q8IWK6 1321 aa25.59■■□□□ 1.69
PTPN4-211ENST00000488279 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.58■■□□□ 1.69
PTPN4-211ENST00000488279 ZBTB42B2RXF5 422 aa25.58■■□□□ 1.69
PTPN4-211ENST00000488279 DGKIO75912 1065 aa25.58■■□□□ 1.69
PTPN4-211ENST00000488279 CTNNB1P35222 781 aa25.58■■□□□ 1.69
PTPN4-211ENST00000488279 BMPR1AP36894 532 aa25.58■■□□□ 1.69
PTPN4-211ENST00000488279 TIGD5Q53EQ6 642 aa25.58■■□□□ 1.69
PTPN4-211ENST00000488279 TRMT1LQ7Z2T5 733 aaKnown RBP25.58■■□□□ 1.69
PTPN4-211ENST00000488279 BANK1Q8NDB2 785 aa25.58■■□□□ 1.69
PTPN4-211ENST00000488279 C22orf23Q9BZE7 217 aa25.58■■□□□ 1.69
PTPN4-211ENST00000488279 UBE2ZQ9H832 354 aaPredicted RBP25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms