RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 TRPV2Q9Y5S1 764 aa13.9□□□□□ -0.18
VPS16-208ENST00000487461 SNX14Q9Y5W7 946 aa13.9□□□□□ -0.18
VPS16-208ENST00000487461 MYO7AQ13402 2215 aa13.9□□□□□ -0.18
VPS16-208ENST00000487461 IGLV3-22A0A075B6J6 115 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 CCDC196A0A1B0GTZ2 297 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 SMIM35A0A1B0GVV1 85 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 RPLP2P05387 115 aaKnown RBP13.89□□□□□ -0.19
VPS16-208ENST00000487461 CYP3A4P08684 503 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 KCNA5P22460 613 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 LEXMQ3ZCV2 418 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 TCEAL5Q5H9L2 206 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 CRIPAKQ8N1N5 446 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 NME8Q8N427 588 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 KHSRPQ92945 711 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS16-208ENST00000487461 BRF1Q92994 677 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 CELF4Q9BZC1 486 aaKnown RBP13.89□□□□□ -0.19
VPS16-208ENST00000487461 ZMYND12Q9H0C1 365 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 CD320Q9NPF0 282 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 PADI3Q9ULW8 664 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 SQORQ9Y6N5 450 aa13.89□□□□□ -0.19
VPS16-208ENST00000487461 C5orf67F2Z3F1 127 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 PRPF3O43395 683 aaKnown RBP13.88□□□□□ -0.19
VPS16-208ENST00000487461 DGKIO75912 1065 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 RB1P06400 928 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 ATP4AP20648 1035 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 KLRC1P26715 233 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 CTNNB1P35222 781 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 SLC26A2P50443 739 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 TIGD5Q53EQ6 642 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 SWSAP1Q6NVH7 229 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 BLOC1S2Q6QNY1 142 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 CLP1Q92989 425 aaKnown RBP13.88□□□□□ -0.19
VPS16-208ENST00000487461 CDHR5Q9HBB8 845 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 TTC3P53804 2025 aa13.88□□□□□ -0.19
VPS16-208ENST00000487461 ESYT2A0FGR8 921 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 M0QZ92 97 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 IPO5O00410 1097 aaKnown RBP13.87□□□□□ -0.19
VPS16-208ENST00000487461 BACH1O14867 736 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 GRM6O15303 877 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 HBP1O60381 514 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 PPFIA3O75145 1194 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 RPS6KB1P23443 525 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 KRT76Q01546 638 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 BTG3Q14201 252 aaPredicted RBP13.87□□□□□ -0.19
VPS16-208ENST00000487461 NTRK3Q16288 839 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 FAM160B1Q5W0V3 765 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 PDXDC2PQ6P474 469 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 CCDC60Q8IWA6 550 aaPredicted RBP13.87□□□□□ -0.19
VPS16-208ENST00000487461 KIAA0319LQ8IZA0 1049 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 FBXL16Q8N461 479 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 NEK9Q8TD19 979 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 ATP8B4Q8TF62 1192 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 PHKBQ93100 1093 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 C1QTNF1Q9BXJ1 281 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 FTHL17Q9BXU8 183 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 AGXT2Q9BYV1 514 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 TMX1Q9H3N1 280 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 NSUN3Q9H649 340 aaKnown RBP13.87□□□□□ -0.19
VPS16-208ENST00000487461 C6orf50Q9HD87 102 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 ZNF302Q9NR11 478 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 COL4A6Q14031 1691 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 ADGRA3Q8IWK6 1321 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 IGSF9BQ9UPX0 1349 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 KDM3AQ9Y4C1 1321 aa13.87□□□□□ -0.19
VPS16-208ENST00000487461 GRXCR2A6NFK2 248 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 ZBTB42B2RXF5 422 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 H3BQ06 376 aaPredicted RBP13.86□□□□□ -0.19
VPS16-208ENST00000487461 EDIL3O43854 480 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 IL9P15248 144 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 PAK2Q13177 524 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 COL19A1Q14993 1142 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 TMEM266Q2M3C6 531 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 ZNF484Q5JVG2 852 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 PTCRAQ6ISU1 281 aaPredicted RBP13.86□□□□□ -0.19
VPS16-208ENST00000487461 MIS18BP1Q6P0N0 1132 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 NPAS4Q8IUM7 802 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 FAM178BQ8IXR5 827 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 RASGRP4Q8TDF6 673 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 PABPC5Q96DU9 382 aaKnown RBP13.86□□□□□ -0.19
VPS16-208ENST00000487461 ZNF577Q9BSK1 485 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 C11orf84Q9BUA3 381 aaPredicted RBP13.86□□□□□ -0.19
VPS16-208ENST00000487461 TBC1D22BQ9NU19 505 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 RWDD3Q9Y3V2 267 aa13.86□□□□□ -0.19
VPS16-208ENST00000487461 NID2Q14112 1375 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 GNA11P29992 359 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 PDIA3P30101 505 aaKnown RBP13.85□□□□□ -0.19
VPS16-208ENST00000487461 PRR16Q569H4 304 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 MCTP2Q6DN12 878 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 EP400NLQ6ZTU2 488 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 REXO1Q8N1G1 1221 aaKnown RBP13.85□□□□□ -0.19
VPS16-208ENST00000487461 CCDC12Q8WUD4 166 aaPredicted RBP13.85□□□□□ -0.19
VPS16-208ENST00000487461 LMAN2LQ9H0V9 348 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 ALG13Q9NP73 1137 aaKnown RBP13.85□□□□□ -0.19
VPS16-208ENST00000487461 PLAGL2Q9UPG8 496 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 GINS2Q9Y248 185 aa13.85□□□□□ -0.19
VPS16-208ENST00000487461 NOC2LQ9Y3T9 749 aaKnown RBP13.85□□□□□ -0.19
VPS16-208ENST00000487461 MAFBQ9Y5Q3 323 aaPredicted RBP13.85□□□□□ -0.19
VPS16-208ENST00000487461 MRPL42Q9Y6G3 142 aaKnown RBP13.85□□□□□ -0.19
VPS16-208ENST00000487461 COL1A2P08123 1366 aa13.84□□□□□ -0.19
VPS16-208ENST00000487461 MGEA5O60502 916 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms