RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TREHO43280 583 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 NBNO60934 754 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 ATG7O95352 703 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 CIITAP33076 1130 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 SP4Q02446 784 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 IKBKEQ14164 716 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 GRIN2CQ14957 1233 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 JAKMIP3Q5VZ66 844 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 RSPH3Q86UC2 560 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 TRIM50Q86XT4 487 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 SYMPKQ92797 1274 aaKnown RBP19.21■□□□□ 0.67
VIM-205ENST00000485947 SCAND2PQ9GZW5 306 aaPredicted RBP19.21■□□□□ 0.67
VIM-205ENST00000485947 TBC1D22BQ9NU19 505 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 SETD4Q9NVD3 440 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 TMEM260Q9NX78 707 aa19.21■□□□□ 0.67
VIM-205ENST00000485947 MBLAC1A4D2B0 266 aaPredicted RBP19.2■□□□□ 0.66
VIM-205ENST00000485947 M0R2N6 131 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 FOSL2P15408 326 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 NCLP19338 710 aaKnown RBP19.2■□□□□ 0.66
VIM-205ENST00000485947 USP11P51784 963 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 PPFIA1Q13136 1202 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 NR5A1Q13285 461 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 FOXD4L6Q3SYB3 417 aaPredicted RBP19.2■□□□□ 0.66
VIM-205ENST00000485947 RILPL1Q5EBL4 403 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 FAM26DQ5JW98 314 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 FAM173BQ6P4H8 233 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 FOXD4L3Q6VB84 417 aaPredicted RBP19.2■□□□□ 0.66
VIM-205ENST00000485947 PLA2G4DQ86XP0 818 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 HERC6Q8IVU3 1022 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 TMEM87AQ8NBN3 555 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 CYP2W1Q8TAV3 490 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 OXER1Q8TDS5 423 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 LMBR1Q8WVP7 490 aa19.2■□□□□ 0.66
VIM-205ENST00000485947 GAS2L1Q99501 681 aaPredicted RBP19.2■□□□□ 0.66
VIM-205ENST00000485947 NOL7Q9UMY1 257 aaKnown RBP19.2■□□□□ 0.66
VIM-205ENST00000485947 IGLV3-22A0A075B6J6 115 aa19.19■□□□□ 0.66
VIM-205ENST00000485947 ARP10275 920 aa19.19■□□□□ 0.66
VIM-205ENST00000485947 ACTR2P61160 394 aa19.19■□□□□ 0.66
VIM-205ENST00000485947 KRT25Q7Z3Z0 450 aa19.19■□□□□ 0.66
VIM-205ENST00000485947 MYLIPQ8WY64 445 aa19.19■□□□□ 0.66
VIM-205ENST00000485947 WNT8BQ93098 351 aa19.19■□□□□ 0.66
VIM-205ENST00000485947 PGBD1Q96JS3 809 aa19.19■□□□□ 0.66
VIM-205ENST00000485947 TRIP12Q14669 1992 aaPredicted RBP19.19■□□□□ 0.66
VIM-205ENST00000485947 IGKV6D-21A0A0A0MT36 114 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 FAM86B1E9PN63 330 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 IPO5O00410 1097 aaKnown RBP19.18■□□□□ 0.66
VIM-205ENST00000485947 FAM86B2P0C5J1 330 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 TRAPPC10P48553 1259 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 STAT5BP51692 787 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 WDR5P61964 334 aaKnown RBP19.18■□□□□ 0.66
VIM-205ENST00000485947 ITGB3BPQ13352 177 aaPredicted RBP19.18■□□□□ 0.66
VIM-205ENST00000485947 GRIK4Q16099 956 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 PLEKHG4Q58EX7 1191 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 PPP2R2DQ66LE6 453 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 APBB2Q92870 758 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 NKX2-4Q9H2Z4 354 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 PKD2L1Q9P0L9 805 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 TCEAL9Q9UHQ7 104 aa19.18■□□□□ 0.66
VIM-205ENST00000485947 YBX2Q9Y2T7 364 aaKnown RBP19.18■□□□□ 0.66
VIM-205ENST00000485947 CCDC194A0A1B0GVG4 234 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 YEATS4O95619 227 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 MBTPS1Q14703 1052 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 FAM160B1Q5W0V3 765 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 ZNF746Q6NUN9 644 aaPredicted RBP19.17■□□□□ 0.66
VIM-205ENST00000485947 SMAP1Q8IYB5 467 aaPredicted RBP19.17■□□□□ 0.66
VIM-205ENST00000485947 SEPT8Q92599 483 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 SPATA32Q96LK8 384 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 USP28Q96RU2 1077 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 PCYT2Q99447 389 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 TUBE1Q9UJT0 475 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 TELO2Q9Y4R8 837 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 SCN5AQ14524 2016 aa19.17■□□□□ 0.66
VIM-205ENST00000485947 DHX15O43143 795 aaKnown RBP19.16■□□□□ 0.66
VIM-205ENST00000485947 NASPP49321 788 aaPredicted RBP19.16■□□□□ 0.66
VIM-205ENST00000485947 RABGGTBP53611 331 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 KRT76Q01546 638 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 MIS18BP1Q6P0N0 1132 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 ABHD15Q6UXT9 468 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 CHAMP1Q96JM3 812 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 ZNF577Q9BSK1 485 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 RAPGEFL1Q9UHV5 662 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 SQORQ9Y6N5 450 aa19.16■□□□□ 0.66
VIM-205ENST00000485947 TET1Q8NFU7 2136 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 BMP15O95972 392 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 MKRN4PQ13434 485 aaPredicted RBP19.15■□□□□ 0.66
VIM-205ENST00000485947 NONOQ15233 471 aaKnown RBP eCLIP19.15■□□□□ 0.66
VIM-205ENST00000485947 MOXD1Q6UVY6 613 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 PIK3AP1Q6ZUJ8 805 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 NME8Q8N427 588 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 USP38Q8NB14 1042 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 DBF4BQ8NFT6 615 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 LEO1Q8WVC0 666 aaPredicted RBP19.15■□□□□ 0.66
VIM-205ENST00000485947 RAD9AQ99638 391 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 TFIP11Q9UBB9 837 aaKnown RBP19.15■□□□□ 0.66
VIM-205ENST00000485947 RCOR1Q9UKL0 485 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 CEP131Q9UPN4 1083 aa19.15■□□□□ 0.66
VIM-205ENST00000485947 MORC2Q9Y6X9 1032 aaPredicted RBP19.15■□□□□ 0.66
VIM-205ENST00000485947 POTEB3A0JP26 581 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 TLL1O43897 1013 aa19.14■□□□□ 0.65
VIM-205ENST00000485947 HBP1O60381 514 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms