RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TSPY8P0CW00 308 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 IBSPP21815 317 aaPredicted RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 ENOX2Q16206 610 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 DDX47Q9H0S4 455 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 MKNK2Q9HBH9 465 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 UTP11Q9Y3A2 253 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 QSER1Q2KHR3 1735 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 DAPK3O43293 454 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 NTSR2O95665 410 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 GSTA1P08263 222 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 MARSP56192 900 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 PPARDQ03181 441 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 DHX9Q08211 1270 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 ERMARDQ5T6L9 678 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 KRT79Q5XKE5 535 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 TRIM59Q8IWR1 403 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 LRRC57Q8N9N7 239 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 LMBR1Q8WVP7 490 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 FAM84BQ96KN1 310 aaPredicted RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 XPO6Q96QU8 1125 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 FAM129AQ9BZQ8 928 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 MAST2Q6P0Q8 1798 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 MYH14Q7Z406 1995 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 ATAD5Q96QE3 1844 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 CCT8L1PA6NM43 557 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 KLRF2D3W0D1 207 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 BACH1O14867 736 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 GBP2P32456 591 aaPredicted RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 FMNL3Q8IVF7 1028 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 REXO1Q8N1G1 1221 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 METTL13Q8N6R0 699 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 SNX29Q8TEQ0 813 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 SEC14L1Q92503 715 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 TLCD1Q96CP7 247 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 RSRC1Q96IZ7 334 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 MTMR9Q96QG7 549 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 SEC63Q9UGP8 760 aaKnown RBP14.5□□□□□ -0.09
USP40-214ENST00000483519 ATP8B3O60423 1300 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.49□□□□□ -0.09
USP40-214ENST00000483519 ATP6V1G2O95670 118 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 USP17L8P0C7I0 530 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 FLT3P36888 993 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 ELF3P78545 371 aaPredicted RBP14.49□□□□□ -0.09
USP40-214ENST00000483519 COASYQ13057 564 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 FAM26FQ5R3K3 315 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 C12orf60Q5U649 245 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 TLDC1Q6P9B6 456 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 PEX26Q7Z412 305 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 RASGEF1CQ8N431 466 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 GLIS3Q8NEA6 775 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 GANQ9H2C0 597 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 AMACRQ9UHK6 382 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 MYH7BA7E2Y1 1941 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 UBR3Q6ZT12 1888 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 DCDC2CA8MYV0 355 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 OPLAHO14841 1288 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 PPIP5K2O43314 1243 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 CTNND1O60716 968 aaKnown RBP14.49□□□□□ -0.09
USP40-214ENST00000483519 RFC4P35249 363 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 PDIA5Q14554 519 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 ITIH4Q14624 930 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 SLC4A8Q2Y0W8 1093 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 SYCE1Q8N0S2 351 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 SLC16A10Q8TF71 515 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 CUL5Q93034 780 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 NOD2Q9HC29 1040 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 STX8Q9UNK0 236 aa14.49□□□□□ -0.09
USP40-214ENST00000483519 USP17L3A6NCW0 530 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 USP17L4A6NCW7 530 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 FLOT1O75955 427 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 SLC8A3P57103 927 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 PTK2Q05397 1052 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 R3HDM1Q15032 1099 aaKnown RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 PPP1R7Q15435 360 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 TMEM119Q4V9L6 283 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 HIBCHQ6NVY1 386 aaPredicted RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 CRELD2Q6UXH1 353 aaPredicted RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 USP17L1Q7RTZ2 530 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 TPCN2Q8NHX9 752 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 HOOK2Q96ED9 719 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 FMO2Q99518 471 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 RAB17Q9H0T7 212 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 BSDC1Q9NW68 430 aaPredicted RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 NIP7Q9Y221 180 aaKnown RBP eCLIP14.48□□□□□ -0.09
USP40-214ENST00000483519 ROBO3Q96MS0 1386 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 F8W031 263 aaPredicted RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 ASAP2O43150 1006 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 ANXA13P27216 316 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 ZNF444Q8N0Y2 327 aaPredicted RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 SPAG5Q96R06 1193 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 TMEM47Q9BQJ4 181 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 BMP2KQ9NSY1 1161 aaPredicted RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 PANK4Q9NVE7 773 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 SUCLA2Q9P2R7 463 aaPredicted RBP14.48□□□□□ -0.09
USP40-214ENST00000483519 BAIAP2L1Q9UHR4 511 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 ZNF652Q9Y2D9 606 aa14.48□□□□□ -0.09
USP40-214ENST00000483519 KIF13BQ9NQT8 1826 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 ESYT2A0FGR8 921 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 TTI1O43156 1089 aa14.47□□□□□ -0.09
USP40-214ENST00000483519 BUB1BO60566 1050 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms