RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 CUL5Q93034 780 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 TMEM87BQ96K49 555 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 YTHDC1Q96MU7 727 aaKnown RBP4.78□□□□□ -1.64
VPS13D-208ENST00000481484 FAM161BQ96MY7 647 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 ZKSCAN3Q9BRR0 538 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 GLT8D2Q9H1C3 349 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 TRPV6Q9H1D0 765 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 RIOX1Q9H6W3 641 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 JMJD4Q9H9V9 463 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 INCENPQ9NQS7 918 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 TRMT13Q9NUP7 481 aaKnown RBP4.78□□□□□ -1.64
VPS13D-208ENST00000481484 ZSWIM5Q9P217 1185 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 GTF2IRD1Q9UHL9 959 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 MAD2L2Q9UI95 211 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 MYO7AQ13402 2215 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 CACNA1HO95180 2353 aa4.78□□□□□ -1.64
VPS13D-208ENST00000481484 UMODL1Q5DID0 1318 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 ABHD14A-ACY1A0A1B0GW23 586 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 ERVH48-1M5A8F1 160 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 HAS3O00219 553 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 NOP56O00567 594 aaKnown RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 FIBPO43427 364 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 PPFIA4O75335 1185 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 IGHDP01880 384 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 ACRP10323 421 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 BMP2P12643 396 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 POU3F3P20264 500 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 CHMLP26374 656 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 HOXC8P31273 242 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 ICAM3P32942 547 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 MCM5P33992 734 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 LIFRP42702 1097 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 CCL23P55773 120 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 MCCD1P59942 119 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 TROAPQ12815 778 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 KRT32Q14532 448 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 GRIN2CQ14957 1233 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 PGM5Q15124 567 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 KIAA0753Q2KHM9 967 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 BMP2KLQ5H9B9 411 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 PCNX4Q63HM2 1172 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 SEPT14Q6ZU15 432 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 C16orf59Q7L2K0 433 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 OTOP2Q7RTS6 562 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 SERINC5Q86VE9 423 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 VSIG10LQ86VR7 867 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 HOMER1Q86YM7 354 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 DHX37Q8IY37 1157 aaKnown RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 MB21D2Q8IYB1 491 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 ZNF654Q8IZM8 581 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 APBB2Q92870 758 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 TNPO1Q92973 898 aaKnown RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 CHMP4CQ96CF2 233 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 RRP36Q96EU6 259 aaKnown RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 SCLYQ96I15 445 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 SPATA33Q96N06 139 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 SAMD11Q96NU1 681 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 INPP4AQ96PE3 977 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 SENP7Q9BQF6 1050 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 COL25A1Q9BXS0 654 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 UBA5Q9GZZ9 404 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 LMCD1Q9NZU5 365 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 CXXC1Q9P0U4 656 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 DDX41Q9UJV9 622 aaKnown RBP4.77□□□□□ -1.65
VPS13D-208ENST00000481484 COG5Q9UP83 839 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 ZDBF2Q9HCK1 2354 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 EVPLQ92817 2033 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 NID2Q14112 1375 aa4.77□□□□□ -1.65
VPS13D-208ENST00000481484 CCDC69A6NI79 296 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 SOBPA7XYQ1 873 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 E7EWF7 191 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 H3BM21 787 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 OPLAHO14841 1288 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 SPINT1O43278 529 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 LILRA1O75019 489 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 TRIOO75962 3097 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 GGPS1O95749 300 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 HMGB1P09429 215 aaKnown RBP4.76□□□□□ -1.65
VPS13D-208ENST00000481484 IQCF3P0C7M6 154 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 ZNF286BP0CG31 522 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 CYP2C9P11712 490 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 WDR5P61964 334 aaKnown RBP4.76□□□□□ -1.65
VPS13D-208ENST00000481484 MRPS5P82675 430 aaKnown RBP4.76□□□□□ -1.65
VPS13D-208ENST00000481484 LY6KQ17RY6 165 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 TIGD5Q53EQ6 642 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 CELF3Q5SZQ8 465 aaKnown RBP4.76□□□□□ -1.65
VPS13D-208ENST00000481484 MCTP2Q6DN12 878 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 TAF2Q6P1X5 1199 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 CYB5R4Q7L1T6 521 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 CENPQQ7L2Z9 268 aaPredicted RBP4.76□□□□□ -1.65
VPS13D-208ENST00000481484 RSPH3Q86UC2 560 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 NLRX1Q86UT6 975 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 SGMS1Q86VZ5 419 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 HERC6Q8IVU3 1022 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 STAG2Q8N3U4 1231 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 SMARCC2Q8TAQ2 1214 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 KAT2BQ92831 832 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 COPS5Q92905 334 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 MAP4K1Q92918 833 aa4.76□□□□□ -1.65
VPS13D-208ENST00000481484 GPRASP2Q96D09 838 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms