RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 APOBEC3FQ8IUX4 373 aaKnown RBP7.59□□□□□ -1.19
VPS50-215ENST00000480943 SPACA3Q8IXA5 215 aa7.59□□□□□ -1.19
VPS50-215ENST00000480943 VGLL2Q8N8G2 317 aa7.59□□□□□ -1.19
VPS50-215ENST00000480943 TDRD7Q8NHU6 1098 aaKnown RBP7.59□□□□□ -1.19
VPS50-215ENST00000480943 FRAT1Q92837 279 aaPredicted RBP7.59□□□□□ -1.19
VPS50-215ENST00000480943 ZBED3Q96IU2 234 aaPredicted RBP7.59□□□□□ -1.19
VPS50-215ENST00000480943 FAM84BQ96KN1 310 aaPredicted RBP7.59□□□□□ -1.19
VPS50-215ENST00000480943 MEIS3Q99687 375 aa7.59□□□□□ -1.19
VPS50-215ENST00000480943 CDK5RAP2Q96SN8 1893 aa7.59□□□□□ -1.19
VPS50-215ENST00000480943 MAST2Q6P0Q8 1798 aa7.59□□□□□ -1.2
VPS50-215ENST00000480943 SSC5DA1L4H1 1573 aa7.59□□□□□ -1.2
VPS50-215ENST00000480943 AOX1Q06278 1338 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 CLRN2A0PK11 232 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 FAM155AB1AL88 458 aaPredicted RBP7.58□□□□□ -1.2
VPS50-215ENST00000480943 FRAT2O75474 233 aaPredicted RBP7.58□□□□□ -1.2
VPS50-215ENST00000480943 PDE8BO95263 885 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 CST3P01034 146 aaPredicted RBP7.58□□□□□ -1.2
VPS50-215ENST00000480943 NF2P35240 595 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 NOGQ13253 232 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 PRKG1Q13976 671 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 PUM3Q15397 648 aaKnown RBP7.58□□□□□ -1.2
VPS50-215ENST00000480943 NKPD1Q17RQ9 610 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 CAVIN4Q5BKX8 364 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 INTS3Q68E01 1043 aaKnown RBP7.58□□□□□ -1.2
VPS50-215ENST00000480943 LETMD1Q6P1Q0 360 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 ARHGAP45Q92619 1136 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 VEZTQ9HBM0 779 aa7.58□□□□□ -1.2
VPS50-215ENST00000480943 ATAD5Q96QE3 1844 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 UBE2Q2LH0YL09 131 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 MYO1BO43795 1136 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 BPNT1O95861 308 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 IFIT1P09914 478 aaKnown RBP7.57□□□□□ -1.2
VPS50-215ENST00000480943 SLC5A1P13866 664 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 TRIM27P14373 513 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 FGFR2P21802 821 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 CLCN7P51798 805 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 FKBP1BP68106 108 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 KIF23Q02241 960 aaPredicted RBP7.57□□□□□ -1.2
VPS50-215ENST00000480943 SFRP5Q5T4F7 317 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 TCERG1LQ5VWI1 586 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 ZNF746Q6NUN9 644 aaPredicted RBP7.57□□□□□ -1.2
VPS50-215ENST00000480943 ATF7IPQ6VMQ6 1270 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 ATG9AQ7Z3C6 839 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 CCDC84Q86UT8 332 aaPredicted RBP7.57□□□□□ -1.2
VPS50-215ENST00000480943 RASAL3Q86YV0 1011 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 DPH2Q9BQC3 489 aaPredicted RBP7.57□□□□□ -1.2
VPS50-215ENST00000480943 PA2G4Q9UQ80 394 aaKnown RBP7.57□□□□□ -1.2
VPS50-215ENST00000480943 HDAC5Q9UQL6 1122 aa7.57□□□□□ -1.2
VPS50-215ENST00000480943 ZBED9Q6R2W3 1325 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 IPO8O15397 1037 aaKnown RBP7.56□□□□□ -1.2
VPS50-215ENST00000480943 GNAI3P08754 354 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 CRKP46108 304 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 LMNB2Q03252 620 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 CAMK2GQ13555 558 aaPredicted RBP7.56□□□□□ -1.2
VPS50-215ENST00000480943 PWP1Q13610 501 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 ATP2B3Q16720 1220 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 BNC2Q6ZN30 1099 aaPredicted RBP7.56□□□□□ -1.2
VPS50-215ENST00000480943 C22orf34Q6ZV56 151 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 RELL1Q8IUW5 271 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 MRPL41Q8IXM3 137 aaKnown RBP7.56□□□□□ -1.2
VPS50-215ENST00000480943 MFSD4AQ8N468 514 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 LPIN2Q92539 896 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 TMEM87BQ96K49 555 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 PRMT6Q96LA8 375 aaPredicted RBP7.56□□□□□ -1.2
VPS50-215ENST00000480943 TMEM74Q96NL1 305 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 DEFB129Q9H1M3 183 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 TDRD3Q9H7E2 651 aaKnown RBP7.56□□□□□ -1.2
VPS50-215ENST00000480943 TJP2Q9UDY2 1190 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 ADAM30Q9UKF2 790 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 FZD1Q9UP38 647 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 FOCADQ5VW36 1801 aa7.56□□□□□ -1.2
VPS50-215ENST00000480943 PRR33A8MZF0 331 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 SRGAP3O43295 1099 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 CA12O43570 354 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 CIAO1O76071 339 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 PF4P02776 101 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 GBP2P32456 591 aaPredicted RBP7.55□□□□□ -1.2
VPS50-215ENST00000480943 SPATS1Q496A3 300 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 ZKSCAN2Q63HK3 967 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 SLC6A19Q695T7 634 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 ARMC9Q7Z3E5 817 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 TMEM151BQ8IW70 566 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 TMEM57Q8N5G2 664 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 RIN3Q8TB24 985 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 GIPC2Q8TF65 315 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 TBC1D22AQ8WUA7 517 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 RHOVQ96L33 236 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 COPRSQ9NQ92 184 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 ZNF70Q9UC06 446 aaPredicted RBP7.55□□□□□ -1.2
VPS50-215ENST00000480943 PPP2R3BQ9Y5P8 575 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 DOCK1Q14185 1865 aa7.55□□□□□ -1.2
VPS50-215ENST00000480943 MAST3O60307 1309 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 PTPRFP10586 1907 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 TCP10L2B9ZVM9 353 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 CILPO75339 1184 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 GNAI2P04899 355 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 CYP7A1P22680 504 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 IL15P40933 162 aaPredicted RBP7.54□□□□□ -1.2
VPS50-215ENST00000480943 TNFAIP1Q13829 316 aa7.54□□□□□ -1.2
VPS50-215ENST00000480943 RASA3Q14644 834 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms