RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NTRK3Q16288 839 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 KHSRPQ92945 711 aaKnown RBP eCLIP13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SDF4Q9BRK5 362 aa13.98□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 IGSF9BQ9UPX0 1349 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SMIM35A0A1B0GVV1 85 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 GOLGA8AA7E2F4 631 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 GOLGA8BA8MQT2 603 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ZBTB42B2RXF5 422 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 DGKIO75912 1065 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CPA1P15085 419 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ATP4AP20648 1035 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 BMPR1AP36894 532 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 EVCP57679 992 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PTPROQ16827 1216 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 MTHFD1LQ6UB35 978 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FAM43BQ6ZT52 329 aaPredicted RBP13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 NME8Q8N427 588 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FIBCD1Q8N539 461 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TRAPPC12Q8WVT3 735 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 EPHX3Q9H6B9 360 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 AZI2Q9H6S1 392 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SNX14Q9Y5W7 946 aa13.97□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CCDC196A0A1B0GTZ2 297 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 POTEB3A0JP26 581 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PRPF3O43395 683 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 SCG2P13521 617 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CD52P31358 61 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 IGBP1P78318 339 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 APOBRQ0VD83 1088 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CTC1Q2NKJ3 1217 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TIGD5Q53EQ6 642 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 IER5Q5VY09 327 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 POTEBQ6S5H4 581 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 Q6ZUG5 572 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FAM178BQ8IXR5 827 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 BANK1Q8NDB2 785 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TNPO1Q92973 898 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 C1QTNF1Q9BXJ1 281 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 FTHL17Q9BXU8 183 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 CELF4Q9BZC1 486 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 PADI3Q9ULW8 664 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 TRPV2Q9Y5S1 764 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 KIAA1671Q9BY89 1806 aa13.96□□□□□ -0.17
MSH5-SAPCD1-205ENST00000476085 ADGRA3Q8IWK6 1321 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 GRXCR2A6NFK2 248 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 HBP1O60381 514 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 CIITAP33076 1130 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 LTBRP36941 435 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 CAMK1Q14012 370 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TCEAL5Q5H9L2 206 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 JAKMIP3Q5VZ66 844 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PLA2G4DQ86XP0 818 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 CCDC60Q8IWA6 550 aaPredicted RBP13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 KIAA0319LQ8IZA0 1049 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ATP8B4Q8TF62 1192 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PABPC5Q96DU9 382 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 FAM49AQ9H0Q0 323 aaPredicted RBP13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 LMAN2LQ9H0V9 348 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TMX1Q9H3N1 280 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TRPC6Q9Y210 931 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 RWDD3Q9Y3V2 267 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 MAFBQ9Y5Q3 323 aaPredicted RBP13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TRIOO75962 3097 aa13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 FNDC1Q4ZHG4 1894 aaPredicted RBP13.95□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PI4K2BG5E9Z4 385 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 IPO5O00410 1097 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 GRM6O15303 877 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 KCNA5P22460 613 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 KLRC1P26715 233 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 METAP2P50579 478 aaKnown RBP eCLIP13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 MCTP2Q6DN12 878 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 BRF1Q92994 677 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 LENG9Q96B70 501 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PLVAPQ9BX97 442 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 NSUN3Q9H649 340 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 CDHR5Q9HBB8 845 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 C11orf16Q9NQ32 467 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 RAPGEFL1Q9UHV5 662 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 COL1A2P08123 1366 aa13.94□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 GPR37L1O60883 481 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 IL9P15248 144 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 RPS6KB1P23443 525 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ZNF76P36508 570 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TMEM62Q0P6H9 643 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PUS10Q3MIT2 529 aaKnown RBP13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ZNF484Q5JVG2 852 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ZNF746Q6NUN9 644 aaPredicted RBP13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 NPAS4Q8IUM7 802 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 CMTR2Q8IYT2 770 aaKnown RBP13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 P2RX5Q93086 422 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 JAKMIP1Q96N16 626 aaKnown RBP13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 C11orf84Q9BUA3 381 aaPredicted RBP13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 ERVK-5Q9HDB9 667 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 TBC1D22BQ9NU19 505 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PLAGL2Q9UPG8 496 aa13.93□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 EPB41L2O43491 1005 aaKnown RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 NCK2O43639 380 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 IFNAR1P17181 557 aa13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 PDIA3P30101 505 aaKnown RBP13.92□□□□□ -0.18
MSH5-SAPCD1-205ENST00000476085 CTNNB1P35222 781 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms