RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 TIPINQ9BVW5 301 aa11.53□□□□□ -0.56
COL12A1-206ENST00000474564 TMEM63CQ9P1W3 806 aa11.53□□□□□ -0.56
COL12A1-206ENST00000474564 MGAMO43451 1857 aa11.53□□□□□ -0.56
COL12A1-206ENST00000474564 GSTTP1A0A1W2PQM5 241 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 ACTN4O43707 911 aaKnown RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 HBP1O60381 514 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 TBCAO75347 108 aaKnown RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 KIF20AO95235 890 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 OATP04181 439 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 INHAP05111 366 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 C6orf222P0C671 652 aaPredicted RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 CCDC192P0DO97 292 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 FSCN1Q16658 493 aaKnown RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 HSDL1Q3SXM5 330 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 GNASQ5JWF2 1037 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 STXBP4Q6ZWJ1 553 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 GPBP1Q86WP2 473 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 SYT2Q8N9I0 419 aaPredicted RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 ANP32BQ92688 251 aaKnown RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 COPS5Q92905 334 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 CEP170P1Q96L14 293 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 PNMA5Q96PV4 448 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 GSDMAQ96QA5 445 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 NAT10Q9H0A0 1025 aaKnown RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 BHMT2Q9H2M3 363 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 TSPY26PQ9H489 355 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 XPNPEP3Q9NQH7 507 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 SEPT9Q9UHD8 586 aaPredicted RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 DACH1Q9UI36 760 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 TRPC6Q9Y210 931 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 MAFBQ9Y5Q3 323 aaPredicted RBP11.52□□□□□ -0.57
COL12A1-206ENST00000474564 EMSYQ7Z589 1322 aa11.52□□□□□ -0.57
COL12A1-206ENST00000474564 IGKV6D-21A0A0A0MT36 114 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 PVALEFA0A1B0GWK0 134 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 A6NJR5 290 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 E9PMD0 336 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 H3BRB1 525 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 LGR5O75473 907 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 MYCNP04198 464 aaPredicted RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 MYL3P08590 195 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 HSPA1AP0DMV8 641 aaKnown RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 HSPA1BP0DMV9 641 aaKnown RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 GNAT1P11488 350 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 IDEP14735 1019 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 CAPN2P17655 700 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 PPP1R2P41236 205 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 DNM2P50570 870 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 GJA9P57773 515 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 ASIC1P78348 528 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 PRKCEQ02156 737 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 STIM1Q13586 685 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 MCM6Q14566 821 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 E2F4Q16254 413 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 FBXO46Q6PJ61 603 aaPredicted RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 TRMT1LQ7Z2T5 733 aaKnown RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 CCDC60Q8IWA6 550 aaPredicted RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 TRIML1Q8N9V2 468 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 RETREG2Q8NC44 543 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 MCPH1Q8NEM0 835 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 PIGOQ8TEQ8 1089 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 SLC7A3Q8WY07 619 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 C7orf25Q9BPX7 421 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 ZHX3Q9H4I2 956 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 TUT1Q9H6E5 874 aaKnown RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 EXOC1Q9NV70 894 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 KBTBD4Q9NVX7 518 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 KIAA1468Q9P260 1216 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 DDX20Q9UHI6 824 aaKnown RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 GNEQ9Y223 722 aaKnown RBP11.51□□□□□ -0.57
COL12A1-206ENST00000474564 COL4A3BPQ9Y5P4 624 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 PTCH2Q9Y6C5 1203 aa11.51□□□□□ -0.57
COL12A1-206ENST00000474564 RRN3P2A6NIE6 340 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 FOXN1O15353 648 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 GAS2O43903 313 aaKnown RBP11.5□□□□□ -0.57
COL12A1-206ENST00000474564 DGAT1O75907 488 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 CABYRO75952 493 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 FAM13AO94988 1023 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 CAVIN2O95810 425 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 IGHA2P01877 340 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 LGALS2P05162 132 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 MMP3P08254 477 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 HSPA8P11142 646 aaKnown RBP11.5□□□□□ -0.57
COL12A1-206ENST00000474564 GAP43P17677 238 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 TMOD1P28289 359 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 ABCD1P33897 745 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 RFC5P40937 340 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 LBX1P52954 281 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 POLGP54098 1239 aaPredicted RBP11.5□□□□□ -0.57
COL12A1-206ENST00000474564 PSMD2Q13200 908 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 ZNF484Q5JVG2 852 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 MAP3K21Q5TCX8 1036 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 CNNM4Q6P4Q7 775 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 PADI6Q6TGC4 694 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 LRSAM1Q6UWE0 723 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 SLC17A8Q8NDX2 589 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 ATP8B4Q8TF62 1192 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 TCP11Q8WWU5 503 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 VTI1AQ96AJ9 217 aa11.5□□□□□ -0.57
COL12A1-206ENST00000474564 DRC1Q96MC2 740 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms