RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ST7Q9NRC1 585 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 SRPK3Q9UPE1 567 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 NR2E1Q9Y466 385 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 WNT9AO14904 365 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 GJA4P35212 333 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 MSX2P35548 267 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 INHBCP55103 352 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 HGFACQ04756 655 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 HSP90AA2PQ14568 343 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 ZMAT1Q5H9K5 638 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 SPTY2D1Q68D10 685 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 TRIM68Q6AZZ1 485 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 MCF2L2Q86YR7 1114 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 IFNL3Q8IZI9 196 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 PLEKHG4BQ96PX9 1271 aa5.69□□□□□ -1.5
CCDC88A-212ENST00000474059 A0A087X1B8 175 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 FAM47E-STBD1D6RA91 191 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 AGRPO00253 132 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 C4BPAP04003 597 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 PDE6AP16499 860 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 ADCY8P40145 1251 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 HNRNPA0Q13151 305 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 TUBA3CQ13748 450 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 EIF4HQ15056 248 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 SEC23AQ15436 765 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 DDR2Q16832 855 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 ZNF568Q3ZCX4 644 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 BTBD8Q5XKL5 378 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 KANK2Q63ZY3 851 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 TUBA3EQ6PEY2 450 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 FAM89AQ96GI7 184 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 SCYL1Q96KG9 808 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 TINF2Q9BSI4 451 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 AMNQ9BXJ7 453 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 TLR9Q9NR96 1032 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 PLA2G3Q9NZ20 509 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 TRAF6Q9Y4K3 522 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 NUB1Q9Y5A7 615 aa5.68□□□□□ -1.5
CCDC88A-212ENST00000474059 KLF4O43474 513 aa5.67□□□□□ -1.5
CCDC88A-212ENST00000474059 AOAHP28039 575 aa5.67□□□□□ -1.5
CCDC88A-212ENST00000474059 KCNQ1P51787 676 aa5.67□□□□□ -1.5
CCDC88A-212ENST00000474059 PCOLCEQ15113 449 aa5.67□□□□□ -1.5
CCDC88A-212ENST00000474059 WDR72Q3MJ13 1102 aa5.67□□□□□ -1.5
CCDC88A-212ENST00000474059 NSMFQ6X4W1 530 aa5.67□□□□□ -1.5
CCDC88A-212ENST00000474059 PCSK5Q92824 1860 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 HMGCRP04035 888 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 PTGS1P23219 599 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 RPS19P39019 145 aaKnown RBP5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 TM4SF20Q53R12 229 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 TMEM200BQ69YZ2 307 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 FSTL4Q6MZW2 842 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 LRSAM1Q6UWE0 723 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 DPP8Q6V1X1 898 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 ARHGAP36Q6ZRI8 547 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 ZNF483Q8TF39 744 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 WNK4Q96J92 1243 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 RIC8BQ9NVN3 520 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 CDC42EP3Q9UKI2 254 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 CBLCQ9ULV8 474 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 DMRT1Q9Y5R6 373 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 TNFRSF18Q9Y5U5 241 aa5.66□□□□□ -1.5
CCDC88A-212ENST00000474059 KRTAP23-1A1A580 65 aa5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 GPR19Q15760 415 aa5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 USP30Q70CQ3 517 aa5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 CXXC5Q7LFL8 322 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 PTRH1Q86Y79 214 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 BCL6BQ8N143 479 aaPredicted RBP5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 PCDH19Q8TAB3 1148 aa5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 C12orf65Q9H3J6 166 aaKnown RBP5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 SMURF1Q9HCE7 757 aa5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 INCENPQ9NQS7 918 aa5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 GALNT8Q9NY28 637 aa5.65□□□□□ -1.5
CCDC88A-212ENST00000474059 C6orf222P0C671 652 aaPredicted RBP5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 HIBADHP31937 336 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 MRE11P49959 708 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 SLC25A3Q00325 362 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 CD83Q01151 205 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 SAFB2Q14151 953 aaKnown RBP eCLIP5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 FILIP1Q7Z7B0 1213 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 OSTM1Q86WC4 334 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 TMPRSS6Q8IU80 811 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 MSL2Q9HCI7 577 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 ARHGAP28Q9P2N2 729 aa5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 PUF60Q9UHX1 559 aaKnown RBP5.64□□□□□ -1.51
CCDC88A-212ENST00000474059 ZNF561-AS1K7EIQ3 104 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 KCNK3O14649 394 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 ADCY3O60266 1144 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 JAM2P57087 298 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 IFRD2Q12894 506 aaPredicted RBP5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 FIGNQ5HY92 759 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 OR14K1Q8NGZ2 314 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 BTBD2Q9BX70 525 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 OR10A2Q9H208 303 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 SLC2A4RGQ9NR83 387 aa5.63□□□□□ -1.51
CCDC88A-212ENST00000474059 TRAV20A0A0B4J274 112 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 ARVCFO00192 962 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 ADH4P08319 380 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 PYGMP11217 842 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 FOXB2Q5VYV0 432 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms