RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 LRP2BPQ9P2M1 347 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 NOC2LQ9Y3T9 749 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 DUSP10Q9Y6W6 482 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 MAPK13O15264 365 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 DDX3YO15523 660 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 HEXIM1O94992 359 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 LIG3P49916 1009 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 PPP2R2AP63151 447 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 GRB10Q13322 594 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 HNRNPDQ14103 355 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 SOGA3Q5TF21 947 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 ANKRD40Q6AI12 368 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 OR52E8Q6IFG1 317 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 DZIP3Q86Y13 1208 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 PARP9Q8IXQ6 854 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 RPGRQ92834 1020 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 PHKBQ93100 1093 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CNOT8Q9UFF9 292 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 PUF60Q9UHX1 559 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 RGPD2P0DJD1 1756 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 KLF11O14901 512 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 TBX3O15119 743 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CYP19A1P11511 503 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CPA3P15088 417 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 FKBP3Q00688 224 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 GABPAQ06546 454 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 PPARAQ07869 468 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 RNF43Q68DV7 783 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CLEC4GQ6UXB4 293 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 DRAXINQ8NBI3 349 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 NEDD1Q8NHV4 660 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CCDC102AQ96A19 550 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF570Q96NI8 536 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 DNAI2Q9GZS0 605 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 B4E1Z4 1266 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 IDH1O75874 414 aaKnown RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 RTN3O95197 1032 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 PHKA1P46020 1223 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 BORAQ6PGQ7 559 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 KRT26Q7Z3Y9 468 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 NELFBQ8WX92 580 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 BARHL2Q9NY43 387 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 TRIM10Q9UDY6 481 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 MIF4GDA9UHW6 222 aaKnown RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 HSPA2P54652 639 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 DHX34Q14147 1143 aaKnown RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 LRRC43Q8N309 656 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 TMEM60Q9H2L4 133 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 TAB2Q9NYJ8 693 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 PCDHA13Q9Y5I0 950 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 GAKO14976 1311 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 A0A087X0T9 212 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 TRIM64CA6NLI5 447 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 KRT14P02533 472 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 FAM228BP0C875 321 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 VCAM1P19320 739 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 GNAQP50148 359 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 PARP10Q53GL7 1025 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 KLHL10Q6JEL2 608 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 ADGRA1Q86SQ6 560 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 ITFG2Q969R8 447 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 FAM210AQ96ND0 272 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 ZSCAN10Q96SZ4 725 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 PDZD7Q9H5P4 517 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 EXOC1Q9NV70 894 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 SLC12A7Q9Y666 1083 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 SLC4A7Q9Y6M7 1214 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 RGPD5Q99666 1765 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 LTBP1Q14766 1721 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 RPTORQ8N122 1335 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 E7EVH7 732 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 SLC16A3O15427 465 aaKnown RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 RARAP10276 462 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 MAGEA1P43355 309 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 PDE6CP51160 858 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 ROR2Q01974 943 aaKnown RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 LRRC19Q9H756 370 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 MKS1Q9NXB0 559 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 CNTN3Q9P232 1028 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 STK24Q9Y6E0 443 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 ADAMTS3O15072 1205 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 PDE8AO60658 829 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 DHRS4L1P0CG22 281 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 T-ENOLP0DO92 83 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 SEC24CP53992 1094 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 AUHQ13825 339 aaKnown RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 WTAPQ15007 396 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 METTL24Q5JXM2 366 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 SPATA5Q8NB90 893 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 ART4Q93070 314 aa5.84□□□□□ -1.47
SYNE1-220ENST00000471834 RRP36Q96EU6 259 aaKnown RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 GPBP1L1Q9HC44 474 aaPredicted RBP5.84□□□□□ -1.47
SYNE1-220ENST00000471834 HNRNPCL1O60812 293 aaKnown RBP5.84□□□□□ -1.48
SYNE1-220ENST00000471834 RHOXF2BP0C7M4 288 aa5.84□□□□□ -1.48
SYNE1-220ENST00000471834 BTKQ06187 659 aa5.84□□□□□ -1.48
SYNE1-220ENST00000471834 GKAP1Q5VSY0 366 aaPredicted RBP5.84□□□□□ -1.48
SYNE1-220ENST00000471834 CYFIP1Q7L576 1253 aa5.84□□□□□ -1.48
SYNE1-220ENST00000471834 RHOXF2Q9BQY4 288 aa5.84□□□□□ -1.48
SYNE1-220ENST00000471834 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.84□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms