RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 NRBP2Q9NSY0 501 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 TUBE1Q9UJT0 475 aa17.2■□□□□ 0.34
SDC3-203ENST00000471567 TRIP12Q14669 1992 aaPredicted RBP17.2■□□□□ 0.34
SDC3-203ENST00000471567 ZNF862O60290 1169 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 DKC1O60832 514 aaKnown RBP eCLIP17.19■□□□□ 0.34
SDC3-203ENST00000471567 PFKMP08237 780 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 OR52Z1P0C646 297 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 TXKP42681 527 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 PSMC5P62195 406 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 LRRC8DQ7L1W4 858 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 BRAPQ7Z569 592 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 TDHQ8IZJ6 230 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 WNT8BQ93098 351 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 CEP131Q9UPN4 1083 aa17.19■□□□□ 0.34
SDC3-203ENST00000471567 MYH9P35579 1960 aaKnown RBP17.19■□□□□ 0.34
SDC3-203ENST00000471567 OATP04181 439 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 P4HBP07237 508 aaKnown RBP17.18■□□□□ 0.34
SDC3-203ENST00000471567 HSP90AA1P07900 732 aaKnown RBP17.18■□□□□ 0.34
SDC3-203ENST00000471567 PDIA4P13667 645 aaKnown RBP17.18■□□□□ 0.34
SDC3-203ENST00000471567 SYT1P21579 422 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 THPOP40225 353 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 QARSP47897 775 aaKnown RBP17.18■□□□□ 0.34
SDC3-203ENST00000471567 EPHB4P54760 987 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 IGBP1P78318 339 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 PRKCEQ02156 737 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 UGCGQ16739 394 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 XKR3Q5GH77 459 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 RSPH3Q86UC2 560 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 C4orf32Q8N8J7 132 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 SCLYQ96I15 445 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 FOXD4L1Q9NU39 408 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 PCDHA2Q9Y5H9 948 aa17.18■□□□□ 0.34
SDC3-203ENST00000471567 VPS37CA5D8V6 355 aaPredicted RBP17.17■□□□□ 0.34
SDC3-203ENST00000471567 ZBTB42B2RXF5 422 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 LAD1O00515 517 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 HABP4Q5JVS0 413 aaKnown RBP17.17■□□□□ 0.34
SDC3-203ENST00000471567 ZNF618Q5T7W0 954 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 NCAPH2Q6IBW4 605 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 PSRC1Q6PGN9 363 aaPredicted RBP17.17■□□□□ 0.34
SDC3-203ENST00000471567 TRAF7Q6Q0C0 670 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 MTHFD1LQ6UB35 978 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 C16orf59Q7L2K0 433 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 NIFKQ9BYG3 293 aaKnown RBP17.17■□□□□ 0.34
SDC3-203ENST00000471567 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.17■□□□□ 0.34
SDC3-203ENST00000471567 PCDHB6Q9Y5E3 794 aa17.17■□□□□ 0.34
SDC3-203ENST00000471567 WDR81Q562E7 1941 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 SMIM35A0A1B0GVV1 85 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 RSPH10B2B2RC85 870 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 MAGEB2O15479 319 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 STBD1O95210 358 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 RSPH10BP0C881 870 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 KLRC1P26715 233 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 PTGDRQ13258 359 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 NBR1Q14596 966 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 SHHQ15465 462 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 FAM26DQ5JW98 314 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 TMEM240Q5SV17 173 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 RUFY4Q6ZNE9 571 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 NME8Q8N427 588 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 BANK1Q8NDB2 785 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 NEK9Q8TD19 979 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 TRAPPC12Q8WVT3 735 aa17.16■□□□□ 0.34
SDC3-203ENST00000471567 FGBP02675 491 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 ACRP10323 421 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 PRPHP41219 470 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 TARBP2Q15633 366 aaKnown RBP17.15■□□□□ 0.34
SDC3-203ENST00000471567 TMEM266Q2M3C6 531 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 C9orf50Q5SZB4 431 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 ZNF365Q70YC5 407 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 TRMT1LQ7Z2T5 733 aaKnown RBP17.15■□□□□ 0.34
SDC3-203ENST00000471567 C4orf19Q8IY42 314 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 VWCEQ96DN2 955 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 HSD17B14Q9BPX1 270 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 EIF2AK1Q9BQI3 630 aaKnown RBP17.15■□□□□ 0.34
SDC3-203ENST00000471567 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.15■□□□□ 0.34
SDC3-203ENST00000471567 ZSWIM4Q9H7M6 989 aa17.15■□□□□ 0.34
SDC3-203ENST00000471567 DDX11L8A8MPP1 907 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 STX6O43752 255 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 SLITRK3O94933 977 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 LYPLA2O95372 231 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 C22orf31O95567 290 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 CXCL10P02778 98 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 TECP42680 631 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 FXR2P51116 673 aaKnown RBP eCLIP17.14■□□□□ 0.33
SDC3-203ENST00000471567 GPNMBQ14956 572 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 LRIT3Q3SXY7 679 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 DNAJB3Q8WWF6 145 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 HERVK_113Q902F9 699 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 DYDC2Q96IM9 177 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 LXNQ9BS40 222 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 MTIF3Q9H2K0 278 aaKnown RBP17.14■□□□□ 0.33
SDC3-203ENST00000471567 RGL1Q9NZL6 768 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 MTMR6Q9Y217 621 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 PPME1Q9Y570 386 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 TANC1Q9C0D5 1861 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 TRIOBPQ9H2D6 2365 aa17.14■□□□□ 0.33
SDC3-203ENST00000471567 NBNO60934 754 aa17.13■□□□□ 0.33
SDC3-203ENST00000471567 BMP15O95972 392 aa17.13■□□□□ 0.33
SDC3-203ENST00000471567 ACTN1P12814 892 aa17.13■□□□□ 0.33
SDC3-203ENST00000471567 ATP2C1P98194 919 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms