RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 LRRC32Q14392 662 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 TERF2Q15554 542 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 BROXQ5VW32 411 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 TMC5Q6UXY8 1006 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 PROSER1Q86XN7 944 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 RPUSD2Q8IZ73 545 aaKnown RBP5.73□□□□□ -1.49
VPS41-210ENST00000462429 ZNF610Q8N9Z0 462 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 IGDCC4Q8TDY8 1250 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 ERCC4Q92889 916 aaPredicted RBP5.73□□□□□ -1.49
VPS41-210ENST00000462429 WRNIP1Q96S55 665 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 PUS7LQ9H0K6 701 aaKnown RBP5.73□□□□□ -1.49
VPS41-210ENST00000462429 TYW1Q9NV66 732 aaKnown RBP5.73□□□□□ -1.49
VPS41-210ENST00000462429 SLC5A4Q9NY91 659 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 BTBD7Q9P203 1132 aa5.73□□□□□ -1.49
VPS41-210ENST00000462429 GOLGA6L22H0YM25 854 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 MED14OSP0DP75 135 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 LIMS1P48059 325 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 ITGA1P56199 1179 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 EVA1CP58658 441 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 ESRP1Q6NXG1 681 aaKnown RBP5.72□□□□□ -1.49
VPS41-210ENST00000462429 LIPIQ6XZB0 460 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 TTLL6Q8N841 843 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 DTX3Q8N9I9 347 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 BHLHE22Q8NFJ8 381 aaPredicted RBP5.72□□□□□ -1.49
VPS41-210ENST00000462429 WDR48Q8TAF3 677 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 CALML6Q8TD86 181 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 C16orf92Q96LL3 132 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 CLIC6Q96NY7 704 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 GORASP1Q9BQQ3 440 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 ZMAT4Q9H898 229 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 SLC39A2Q9NP94 309 aa5.72□□□□□ -1.49
VPS41-210ENST00000462429 USP36Q9P275 1121 aaKnown RBP5.72□□□□□ -1.49
VPS41-210ENST00000462429 UBA6A0AVT1 1052 aaPredicted RBP5.71□□□□□ -1.5
VPS41-210ENST00000462429 PRAMEF22A3QJZ6 481 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 CYP7B1O75881 506 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 FAM50AQ14320 339 aaKnown RBP5.71□□□□□ -1.5
VPS41-210ENST00000462429 SKIDA1Q1XH10 827 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 RGL3Q3MIN7 710 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 PRAMEF18Q5VWM3 479 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 ATG14Q6ZNE5 492 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 FRMD7Q6ZUT3 714 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 FERMT3Q86UX7 667 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 RASSF3Q86WH2 238 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 CILP2Q8IUL8 1156 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 PHYKPLQ8IUZ5 450 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 C7orf31Q8N865 590 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 KYQ8NBH2 561 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 CLRN3Q8NCR9 226 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 FOXB1Q99853 325 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 C11orf84Q9BUA3 381 aaPredicted RBP5.71□□□□□ -1.5
VPS41-210ENST00000462429 INCENPQ9NQS7 918 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 UCKL1Q9NWZ5 548 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 GALNT8Q9NY28 637 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 ARHGAP20Q9P2F6 1191 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 RBPJLQ9UBG7 517 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 NOC2LQ9Y3T9 749 aaKnown RBP5.71□□□□□ -1.5
VPS41-210ENST00000462429 PMF1-BGLAPU3KQ54 211 aa5.71□□□□□ -1.5
VPS41-210ENST00000462429 RFXAPO00287 272 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 PRKD3O94806 890 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 MC4RP32245 332 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 ALDH6A1Q02252 535 aaKnown RBP5.7□□□□□ -1.5
VPS41-210ENST00000462429 ROM1Q03395 351 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 TTC38Q5R3I4 469 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 OGFOD2Q6N063 350 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 TIGD7Q6NT04 549 aaPredicted RBP5.7□□□□□ -1.5
VPS41-210ENST00000462429 CNKSR3Q6P9H4 555 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 RTN4RL1Q86UN2 441 aaPredicted RBP5.7□□□□□ -1.5
VPS41-210ENST00000462429 TMEFF1Q8IYR6 380 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 LINC00482Q8N8I6 264 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 RTF1Q92541 710 aaKnown RBP5.7□□□□□ -1.5
VPS41-210ENST00000462429 ZBTB8AQ96BR9 441 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 FOXRED1Q96CU9 486 aaPredicted RBP5.7□□□□□ -1.5
VPS41-210ENST00000462429 MAML3Q96JK9 1138 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 CEP89Q96ST8 783 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 ZDHHC5Q9C0B5 715 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 DDX56Q9NY93 547 aaKnown RBP5.7□□□□□ -1.5
VPS41-210ENST00000462429 CNOT6Q9ULM6 557 aaKnown RBP5.7□□□□□ -1.5
VPS41-210ENST00000462429 WASF3Q9UPY6 502 aa5.7□□□□□ -1.5
VPS41-210ENST00000462429 KDM1AO60341 852 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 FBXO21O94952 628 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 TSPAN15O95858 294 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 MPIG6BO95866 241 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 ECE1P42892 770 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 EXOSC10Q01780 885 aaKnown RBP5.69□□□□□ -1.5
VPS41-210ENST00000462429 ADAM9Q13443 819 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 PKN1Q16512 942 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 DPP8Q6V1X1 898 aaPredicted RBP5.69□□□□□ -1.5
VPS41-210ENST00000462429 ESPNLQ6ZVH7 1005 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 STK32CQ86UX6 486 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 FAM129CQ86XR2 697 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 POU5F2Q8N7G0 328 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 CNTD1Q8N815 330 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 COG1Q8WTW3 980 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 AHCYL2Q96HN2 611 aaKnown RBP5.69□□□□□ -1.5
VPS41-210ENST00000462429 ZSWIM3Q96MP5 696 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 NOX5Q96PH1 765 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 TUBGCP5Q96RT8 1024 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 SYT3Q9BQG1 590 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 BTBD2Q9BX70 525 aa5.69□□□□□ -1.5
VPS41-210ENST00000462429 KCNG1Q9UIX4 513 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms