RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SPRED2Q7Z698 418 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 OSBPL7Q9BZF2 842 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 SH3GLB2Q9NR46 395 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 CDY2AQ9Y6F7 541 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 MUC3AQ02505 3323 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 RBAK-RBAKDNI3L0D1 243 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 ATG7O95352 703 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 DEXIO95424 95 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 CCNE2O96020 404 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 NLRP5P59047 1200 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 ERVK-21P61565 698 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 HTRA4P83105 476 aaPredicted RBP15.83■□□□□ 0.12
USP4-206ENST00000461553 LPIN1Q14693 890 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 IER5Q5VY09 327 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 TSHZ1Q6ZSZ6 1077 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 CCDC60Q8IWA6 550 aaPredicted RBP15.83■□□□□ 0.12
USP4-206ENST00000461553 ZNF274Q96GC6 653 aaPredicted RBP15.83■□□□□ 0.12
USP4-206ENST00000461553 ZNF302Q9NR11 478 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 TBC1D22BQ9NU19 505 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 PDRG1Q9NUG6 133 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 TRPV2Q9Y5S1 764 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 COL1A2P08123 1366 aa15.83■□□□□ 0.12
USP4-206ENST00000461553 IGKV6D-21A0A0A0MT36 114 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.82■□□□□ 0.12
USP4-206ENST00000461553 ADAMTS3O15072 1205 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 HBP1O60381 514 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 UPP2O95045 317 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 MRPS5P82675 430 aaKnown RBP15.82■□□□□ 0.12
USP4-206ENST00000461553 KRT76Q01546 638 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 STK3Q13188 491 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 FBXO47Q5MNV8 452 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 KRT40Q6A162 431 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 ZNF746Q6NUN9 644 aaPredicted RBP15.82■□□□□ 0.12
USP4-206ENST00000461553 PDXDC2PQ6P474 469 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 ABHD15Q6UXT9 468 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 SMAP1Q8IYB5 467 aaPredicted RBP15.82■□□□□ 0.12
USP4-206ENST00000461553 FBXO22Q8NEZ5 403 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 SP7Q8TDD2 431 aaPredicted RBP15.82■□□□□ 0.12
USP4-206ENST00000461553 ATP8B4Q8TF62 1192 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 TRAPPC12Q8WVT3 735 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 TOP1MTQ969P6 601 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 ZBTB10Q96DT7 871 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 UIMC1Q96RL1 719 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 C22orf23Q9BZE7 217 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 PCDHA2Q9Y5H9 948 aa15.82■□□□□ 0.12
USP4-206ENST00000461553 DHX15O43143 795 aaKnown RBP15.81■□□□□ 0.12
USP4-206ENST00000461553 LPXNO60711 386 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 CDKL5O76039 1030 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 CIITAP33076 1130 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 CKAP2LQ8IYA6 745 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 SAMD11Q96NU1 681 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 ASB2Q96Q27 587 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 LARP6Q9BRS8 491 aaKnown RBP15.81■□□□□ 0.12
USP4-206ENST00000461553 PCDHA4Q9UN74 947 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 SAMM50Q9Y512 469 aa15.81■□□□□ 0.12
USP4-206ENST00000461553 IGSF9BQ9UPX0 1349 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 SMIM35A0A1B0GVV1 85 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 PSAPP07602 524 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 TMEM62Q0P6H9 643 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 PAK2Q13177 524 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 AAK1Q2M2I8 961 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 SWSAP1Q6NVH7 229 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 MTHFD1LQ6UB35 978 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 FAM177A1Q8N128 213 aaPredicted RBP15.8■□□□□ 0.12
USP4-206ENST00000461553 C17orf80Q9BSJ5 609 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 SUGCTQ9HAC7 445 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 LMCD1Q9NZU5 365 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 SQORQ9Y6N5 450 aa15.8■□□□□ 0.12
USP4-206ENST00000461553 ADGRA3Q8IWK6 1321 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 WDR64B1ANS9 1081 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 CD52P31358 61 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 ZNF484Q5JVG2 852 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 DAGLBQ8NCG7 672 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 BBXQ8WY36 941 aaPredicted RBP15.79■□□□□ 0.12
USP4-206ENST00000461553 LENG9Q96B70 501 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 FAM167AQ96KS9 214 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 FTHL17Q9BXU8 183 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 SLKQ9H2G2 1235 aaPredicted RBP15.79■□□□□ 0.12
USP4-206ENST00000461553 CEP131Q9UPN4 1083 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 PCDHA10Q9Y5I2 948 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 FNDC1Q4ZHG4 1894 aaPredicted RBP15.79■□□□□ 0.12
USP4-206ENST00000461553 MYO7AQ13402 2215 aa15.79■□□□□ 0.12
USP4-206ENST00000461553 STK36Q9NRP7 1315 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 KDM3AQ9Y4C1 1321 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 GAS7O60861 476 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 KLRC1P26715 233 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 USP11P51784 963 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 ANAPC15P60006 121 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 LRCH2Q5VUJ6 765 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 GALNT17Q6IS24 598 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 BLIDQ8IZY5 108 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 NME8Q8N427 588 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 TBCKQ8TEA7 893 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 TEKT3Q9BXF9 490 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 CELF4Q9BZC1 486 aaKnown RBP15.78■□□□□ 0.12
USP4-206ENST00000461553 AGO3Q9H9G7 860 aaKnown RBP15.78■□□□□ 0.12
USP4-206ENST00000461553 GABBR1Q9UBS5 961 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 COG5Q9UP83 839 aa15.78■□□□□ 0.12
USP4-206ENST00000461553 MAFBQ9Y5Q3 323 aaPredicted RBP15.78■□□□□ 0.12
USP4-206ENST00000461553 MSH4O15457 936 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms