RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 HTRA4P83105 476 aaPredicted RBP13.66□□□□□ -0.22
USP40-210ENST00000454354 ANKRD1Q15327 319 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 PRR16Q569H4 304 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 GALNT17Q6IS24 598 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 MIS18BP1Q6P0N0 1132 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 POTEBQ6S5H4 581 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 BLIDQ8IZY5 108 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 ATP8B4Q8TF62 1192 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 ZBED2Q9BTP6 218 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 IFIH1Q9BYX4 1025 aaKnown RBP13.66□□□□□ -0.22
USP40-210ENST00000454354 ZNF302Q9NR11 478 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 BDP1A6H8Y1 2624 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 XIRP2A4UGR9 3374 aa13.66□□□□□ -0.22
USP40-210ENST00000454354 IGSF9BQ9UPX0 1349 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.65□□□□□ -0.22
USP40-210ENST00000454354 LINC01553A4QN01 128 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 EPOPA6NHQ4 379 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 BACH1O14867 736 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 MSH4O15457 936 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 HBP1O60381 514 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 AK2P54819 239 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 LPIN1Q14693 890 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 Q4G0T1 1027 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 FBXO47Q5MNV8 452 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 SP7Q8TDD2 431 aaPredicted RBP13.65□□□□□ -0.22
USP40-210ENST00000454354 TBCKQ8TEA7 893 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 TRAPPC12Q8WVT3 735 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 DNAJB3Q8WWF6 145 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 ZBTB10Q96DT7 871 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 AIFM3Q96NN9 605 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 SLKQ9H2G2 1235 aaPredicted RBP13.65□□□□□ -0.22
USP40-210ENST00000454354 MAFBQ9Y5Q3 323 aaPredicted RBP13.65□□□□□ -0.22
USP40-210ENST00000454354 CDY2AQ9Y6F7 541 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 SQORQ9Y6N5 450 aa13.65□□□□□ -0.22
USP40-210ENST00000454354 KDM3AQ9Y4C1 1321 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 ARID2Q68CP9 1835 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 CYP3A7-CYP3A51PA0A087WV96 503 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 SMIM35A0A1B0GVV1 85 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 ZBTB42B2RXF5 422 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 PSAPP07602 524 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 GHRP10912 638 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 ATP4AP20648 1035 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 IGFBP4P22692 258 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 CYP3A7P24462 503 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 ZNF484Q5JVG2 852 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 IER5Q5VY09 327 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 SWSAP1Q6NVH7 229 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 PDXDC2PQ6P474 469 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 MTHFD1LQ6UB35 978 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 MOXD1Q6UVY6 613 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 TSHZ1Q6ZSZ6 1077 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 SPRED2Q7Z698 418 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 MYOCDQ8IZQ8 938 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 SLC5A5Q92911 643 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 TOP1MTQ969P6 601 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 MBOAT7Q96N66 472 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 RIT2Q99578 217 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 PHF20Q9BVI0 1012 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 CERS4Q9HA82 394 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 TCEAL9Q9UHQ7 104 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 INSL6Q9Y581 213 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 PCDHA10Q9Y5I2 948 aa13.64□□□□□ -0.23
USP40-210ENST00000454354 FNDC1Q4ZHG4 1894 aaPredicted RBP13.63□□□□□ -0.23
USP40-210ENST00000454354 WDR64B1ANS9 1081 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 RFXAPO00287 272 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 DLL1O00548 723 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 LPXNO60711 386 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 CTDNEP1O95476 244 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 ERVK-21P61565 698 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 NONOQ15233 471 aaKnown RBP eCLIP13.63□□□□□ -0.23
USP40-210ENST00000454354 FAM117BQ6P1L5 589 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 KRT25Q7Z3Z0 450 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 NME8Q8N427 588 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 BBXQ8WY36 941 aaPredicted RBP13.63□□□□□ -0.23
USP40-210ENST00000454354 ARNTL2Q8WYA1 636 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 UIMC1Q96RL1 719 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 TGS1Q96RS0 853 aaKnown RBP13.63□□□□□ -0.23
USP40-210ENST00000454354 FAM49AQ9H0Q0 323 aaPredicted RBP13.63□□□□□ -0.23
USP40-210ENST00000454354 TRPV2Q9Y5S1 764 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 MTCH2Q9Y6C9 303 aa13.63□□□□□ -0.23
USP40-210ENST00000454354 MUC3AQ02505 3323 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 SEC24BO95487 1268 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 TDP2O95551 362 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 C22orf31O95567 290 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 KLRC1P26715 233 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 SFNP31947 248 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 GRB10Q13322 594 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 B3GNT9Q6UX72 402 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 GTF3C6Q969F1 213 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 FAM167AQ96KS9 214 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 TEKT3Q9BXF9 490 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 CELF4Q9BZC1 486 aaKnown RBP13.62□□□□□ -0.23
USP40-210ENST00000454354 KCNJ14Q9UNX9 436 aa13.62□□□□□ -0.23
USP40-210ENST00000454354 M0QZ92 97 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 GTPBP6O43824 516 aaPredicted RBP13.61□□□□□ -0.23
USP40-210ENST00000454354 GAS7O60861 476 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 PSMD10O75832 226 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 LARGE1O95461 756 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 XBP1P17861 261 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 JAK3P52333 1124 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms