RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 NACC1Q96RE7 527 aa16.34■□□□□ 0.21
TNF-208ENST00000449264 PCYT2Q99447 389 aa16.34■□□□□ 0.21
TNF-208ENST00000449264 MTRQ99707 1265 aa16.34■□□□□ 0.21
TNF-208ENST00000449264 AP5M1Q9H0R1 490 aa16.34■□□□□ 0.21
TNF-208ENST00000449264 BLZF1Q9H2G9 400 aa16.34■□□□□ 0.21
TNF-208ENST00000449264 MAGEF1Q9HAY2 307 aa16.34■□□□□ 0.21
TNF-208ENST00000449264 PTPN22Q9Y2R2 807 aa16.34■□□□□ 0.21
TNF-208ENST00000449264 IGKV6D-21A0A0A0MT36 114 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 SYCE3A1L190 88 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 TMEM150BA6NC51 233 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 CTAGE5O15320 804 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 ZNF862O60290 1169 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 DKC1O60832 514 aaKnown RBP eCLIP16.33■□□□□ 0.2
TNF-208ENST00000449264 ZNF286BP0CG31 522 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 MARK3P27448 753 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 YWHABP31946 246 aaKnown RBP16.33■□□□□ 0.2
TNF-208ENST00000449264 STAT5BP51692 787 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 LBX1P52954 281 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 MAP3K21Q5TCX8 1036 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 C4orf19Q8IY42 314 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 SH2D3AQ9BRG2 576 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 KBTBD4Q9NVX7 518 aa16.33■□□□□ 0.2
TNF-208ENST00000449264 SEPT9Q9UHD8 586 aaPredicted RBP16.33■□□□□ 0.2
TNF-208ENST00000449264 EYA4O95677 639 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 LGALS2P05162 132 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 RARBP10826 455 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 IRX5P78411 483 aaPredicted RBP16.32■□□□□ 0.2
TNF-208ENST00000449264 PLA2G4FQ68DD2 849 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 SH3RF1Q7Z6J0 888 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 GPBP1Q86WP2 473 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 MAFBQ9Y5Q3 323 aaPredicted RBP16.32■□□□□ 0.2
TNF-208ENST00000449264 EMSYQ7Z589 1322 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 FRMPD3Q5JV73 1810 aa16.32■□□□□ 0.2
TNF-208ENST00000449264 BRCA2P51587 3418 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 DUSP11O75319 330 aaKnown RBP16.31■□□□□ 0.2
TNF-208ENST00000449264 LGR5O75473 907 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 LYPLA2O95372 231 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 OATP04181 439 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 C6orf222P0C671 652 aaPredicted RBP16.31■□□□□ 0.2
TNF-208ENST00000449264 CTCFP49711 727 aaPredicted RBP16.31■□□□□ 0.2
TNF-208ENST00000449264 SLC12A3P55017 1021 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 BEX3Q00994 111 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 CUL4BQ13620 913 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 KCTD17Q8N5Z5 321 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 AFAP1L1Q8TED9 768 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 SYNRGQ9UMZ2 1314 aa16.31■□□□□ 0.2
TNF-208ENST00000449264 ARHGEF35A5YM69 484 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 GTPBP6O43824 516 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 PGK1P00558 417 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 CPT1AP50416 773 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 MDM2Q00987 491 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 AMPD3Q01432 767 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 RAD51AP2Q09MP3 1159 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 DGKDQ16760 1214 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 SLC9C1Q4G0N8 1177 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 BRDTQ58F21 947 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 XKR9Q5GH70 373 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 DYMQ7RTS9 669 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 SYT2Q8N9I0 419 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 SMARCAD1Q9H4L7 1026 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 Q9Y3F1 56 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 MYADML2A6NDP7 307 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 MYMKA6NI61 221 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 A6NJR5 290 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 PPFIA4O75335 1185 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 MYCP01106 439 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 MYCNP04198 464 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 KRT18P05783 430 aaKnown RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 ATP4AP20648 1035 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 RARRES1P49788 294 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 ASIC1P78348 528 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 FSCN1Q16658 493 aaKnown RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 XKR3Q5GH77 459 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 ANO5Q75V66 913 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 CTU1Q7Z7A3 348 aaKnown RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 ELOA2Q8IYF1 753 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 SMARCE1Q969G3 411 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 RUSC1Q9BVN2 902 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 TRIM9Q9C026 710 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 SPC25Q9HBM1 224 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 HMX1Q9NP08 348 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 XPNPEP3Q9NQH7 507 aa16.3■□□□□ 0.2
TNF-208ENST00000449264 BMP2KQ9NSY1 1161 aaPredicted RBP16.3■□□□□ 0.2
TNF-208ENST00000449264 MYH11P35749 1972 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 NPHP3-ACAD11A0A0J9YXS1 232 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 USO1O60763 962 aaKnown RBP16.29■□□□□ 0.2
TNF-208ENST00000449264 MYL3P08590 195 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 CYP11B2P19099 503 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 NPEPPSP55786 919 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 CHMP4BP1P59074 171 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 CACNB1Q02641 598 aaPredicted RBP16.29■□□□□ 0.2
TNF-208ENST00000449264 DPYDQ12882 1025 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 MTERF2Q49AM1 385 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 RBM43Q6ZSC3 357 aaKnown RBP16.29■□□□□ 0.2
TNF-208ENST00000449264 OTUD6AQ7L8S5 288 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 PLPPR4Q7Z2D5 763 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 DDX12PQ92771 950 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 CEP170P1Q96L14 293 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 LRRC27Q9C0I9 530 aa16.29■□□□□ 0.2
TNF-208ENST00000449264 ERAP1Q9NZ08 941 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms