RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TFF2Q03403 129 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 GPM6BQ13491 265 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 PFKFB3Q16875 520 aaPredicted RBP8.05□□□□□ -1.12
VPS41-208ENST00000448833 ZNF484Q5JVG2 852 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 WWC2Q6AWC2 1192 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 MIS18BP1Q6P0N0 1132 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 BLOC1S2Q6QNY1 142 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 POTEBQ6S5H4 581 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 TMCO2Q7Z6W1 182 aaPredicted RBP8.05□□□□□ -1.12
VPS41-208ENST00000448833 TMEM192Q8IY95 271 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 SMAP1Q8IYB5 467 aaPredicted RBP8.05□□□□□ -1.12
VPS41-208ENST00000448833 FAM177A1Q8N128 213 aaPredicted RBP8.05□□□□□ -1.12
VPS41-208ENST00000448833 CCDC148Q8NFR7 591 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 GDPD5Q8WTR4 605 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 DNAJB3Q8WWF6 145 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 PPP2R3CQ969Q6 453 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 PLVAPQ9BX97 442 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 ANO3Q9BYT9 981 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 C22orf23Q9BZE7 217 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 AGO4Q9HCK5 861 aaKnown RBP8.05□□□□□ -1.12
VPS41-208ENST00000448833 CEP131Q9UPN4 1083 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 COL1A2P08123 1366 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 KDM3AQ9Y4C1 1321 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 SMIM35A0A1B0GVV1 85 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 C5orf67F2Z3F1 127 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 IPO5O00410 1097 aaKnown RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 BACH1O14867 736 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 PRPF3O43395 683 aaKnown RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 ARHGEF15O94989 841 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 GHRP10912 638 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 HSPA4P34932 840 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 CLK2P49760 499 aaKnown RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 KCNQ1P51787 676 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 IGBP1P78318 339 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 KRT76Q01546 638 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 MGAT3Q09327 533 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 FUT2Q10981 343 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 PAK2Q13177 524 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 BTG3Q14201 252 aaPredicted RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 LPIN1Q14693 890 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 TCTN1Q2MV58 587 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 LEXMQ3ZCV2 418 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 FBXO47Q5MNV8 452 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 MARCH8Q5T0T0 291 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 RAB11FIP4Q86YS3 637 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 REXO1Q8N1G1 1221 aaKnown RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 BANK1Q8NDB2 785 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 KCNB2Q92953 911 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 CCDC136Q96JN2 1154 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 C17orf80Q9BSJ5 609 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 CELF4Q9BZC1 486 aaKnown RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 ZMYND12Q9H0C1 365 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 NSUN3Q9H649 340 aaKnown RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 UBE2ZQ9H832 354 aaPredicted RBP8.04□□□□□ -1.12
VPS41-208ENST00000448833 PKD2L1Q9P0L9 805 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 BRPF3Q9ULD4 1205 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 TRPV2Q9Y5S1 764 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 CDY2AQ9Y6F7 541 aa8.04□□□□□ -1.12
VPS41-208ENST00000448833 ADGRA3Q8IWK6 1321 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 IGKV6D-21A0A0A0MT36 114 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 FSD2A1L4K1 749 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 GPR182O15218 404 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 MAGEB2O15479 319 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 EIF5BO60841 1220 aaKnown RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 DGKIO75912 1065 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 PSAPP07602 524 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 ARP10275 920 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 KLRC1P26715 233 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 TMOD1P28289 359 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 CTNNB1P35222 781 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 ADD1P35611 737 aaKnown RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 BMPR1AP36894 532 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 USP11P51784 963 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 CLCN6P51797 869 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 CDC42EP1Q00587 391 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 PLCB4Q15147 1175 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 ADCK5Q3MIX3 580 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 KRT40Q6A162 431 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 ZNF746Q6NUN9 644 aaPredicted RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 PDXDC2PQ6P474 469 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 CPLX2Q6PUV4 134 aaKnown RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 MTHFD1LQ6UB35 978 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 ABHD15Q6UXT9 468 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 RUFY4Q6ZNE9 571 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 Q6ZUG5 572 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 PLA2G4DQ86XP0 818 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 NPAS4Q8IUM7 802 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 CKAP2LQ8IYA6 745 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 TRIM22Q8IYM9 498 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 CMTR2Q8IYT2 770 aaKnown RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 ATP8B4Q8TF62 1192 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 CLP1Q92989 425 aaKnown RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 BRF1Q92994 677 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 P2RX5Q93086 422 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 PABPC5Q96DU9 382 aaKnown RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 FAM167AQ96KS9 214 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 JAKMIP1Q96N16 626 aaKnown RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 ZNF577Q9BSK1 485 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 RNF26Q9BY78 433 aaPredicted RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms